11/3/2020

nsalomonis · Nov 3, 2020 · 6677889 · 6677889
1 parent b5844f8
commit 6677889
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Showing 2 changed files with 9 additions and 9 deletions.
diff --git a/UI.py b/UI.py
@@ -5452,12 +5452,12 @@ def rebootAltAnalyzeGUI(selected_parameters,user_variables):
                     input_file2 = gu.Results()['input_file2']
                     input_file3 = gu.Results()['input_file3']
                     input_file4 = gu.Results()['input_file4']
-                    input_file1 = gu.Results()['input_file5']
-                    input_file2 = gu.Results()['input_file6']
-                    input_file3 = gu.Results()['input_file7']
-                    input_file4 = gu.Results()['input_file8']
-                    input_file3 = gu.Results()['input_file9']
-                    input_file4 = gu.Results()['input_file10']
+                    input_file5 = gu.Results()['input_file5']
+                    input_file6 = gu.Results()['input_file6']
+                    input_file7 = gu.Results()['input_file7']
+                    input_file8 = gu.Results()['input_file8']
+                    input_file9 = gu.Results()['input_file9']
+                    input_file10 = gu.Results()['input_file10']
                     join_option = gu.Results()['join_option']
                     ID_option = gu.Results()['ID_option']
                     output_merge_dir = gu.Results()['output_merge_dir']

diff --git a/build_scripts/GeneSetDownloader.py b/build_scripts/GeneSetDownloader.py
@@ -1,4 +1,4 @@
-###MetabolomicsParser
+###GeneSetDownloader
 #Copyright 2005-2008 J. David Gladstone Institutes, San Francisco California
 #Author Nathan Salomonis - [email protected]
 
@@ -1307,7 +1307,7 @@ def importExistingGeneTermRelationships(fn,new_term_to_gene):
     selected_species = ['Hs']
     force = 'yes'
     download_species = 'Hs'
-    species = 'Mm'
+    species = 'Hs'
     #species = 'Mm'
     mod = 'Ensembl'
     #"""
@@ -1320,6 +1320,6 @@ def importExistingGeneTermRelationships(fn,new_term_to_gene):
     #translateBioMarkersBetweenSpecies('AltDatabase/ensembl/'+download_species,species);sys.exit()
     additional_resources=['Latest WikiPathways','PathwayCommons','Transcription Factor Targets','Domains','BioMarkers']
     additional_resources+=['miRNA Targets','GOSlim','Disease Ontology','Phenotype Ontology','KEGG','RVista Transcription Factor Sites']
-    additional_resources=['Phenotype Ontology']
+    additional_resources=['Phenotype Ontology','Disease Ontology']
     buildAccessoryPathwayDatabases(selected_species,additional_resources,force)