fix(arborist): use rawSpec for bundled and shrinkwrapped deps #4963
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we don't apply overrides to shrinkwrapped or bundled dependencies as a side effect today, however we are currently marking them as invalid because of that
this change makes it so that bundled and shrinkwrapped dependencies will never be overridden in an explicit way, as well as resolves the
npm lserrors that can occur in this situation.closes #4889