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[BUG] Impossible to link more than one local module dependency one at a time. #2554

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tristanls opened this issue Jan 27, 2021 · 9 comments · Fixed by #3399
Closed

[BUG] Impossible to link more than one local module dependency one at a time. #2554

tristanls opened this issue Jan 27, 2021 · 9 comments · Fixed by #3399
Labels
Bug thing that needs fixing Priority 1 high priority issue Release 7.x work is associated with a specific npm 7 release

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@tristanls
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tristanls commented Jan 27, 2021

Current Behavior:

Running :/moduleA $ npm link moduleB seems to attempt to install moduleA before linking moduleB. If moduleA depends on another local moduleC, linking moduleB into moduleA is impossible.

Expected Behavior:

Running :/moduleA $ npm link moduleB links moduleB into moduleA/node_modules/moduleB. (just like npm@6 does)

Steps To Reproduce:

Overview:

  1. Create moduleB and moduleC that are not in npm registry.
  2. Use moduleB and moduleC as a dependency in moduleA.
  3. Execute :/moduleA $ npm link moduleB. It will result in failing to find moduleC in npm registry.

Details:

$ ll
total 0
drwxr-xr-x  3 tristan  wheel   96 Jan 27 08:24 moduleA
drwxr-xr-x  3 tristan  wheel   96 Jan 27 08:23 moduleB
drwxr-xr-x  3 tristan  wheel   96 Jan 27 08:23 moduleC
$ cat moduleA/package.json 
{
  "name": "modulea",
  "version": "1.0.0",
  "dependencies": {
    "moduleb": "1.0.0",
    "modulec": "1.0.0"
  }
}
$ cat moduleB/package.json 
{
  "name": "moduleb",
  "version": "1.0.0"
}
$ cat moduleC/package.json 
{
  "name": "modulec",
  "version": "1.0.0"
}
$ cd moduleB/
:/moduleB $ npm link

up to date, audited 3 packages in 476ms

found 0 vulnerabilities
$ cd ../moduleC
:/moduleC $ npm link

up to date, audited 3 packages in 778ms

found 0 vulnerabilities

Please note that in the below step we attempt to link moduleB, but it complains about not finding moduleC.

$ cd ../moduleA
:/moduleA $ npm link moduleb
npm ERR! code E404
npm ERR! 404 Not Found - GET https://registry.npmjs.org/modulec - Not found
npm ERR! 404 
npm ERR! 404  '[email protected]' is not in the npm registry.
npm ERR! 404 You should bug the author to publish it (or use the name yourself!)
npm ERR! 404 
npm ERR! 404 Note that you can also install from a
npm ERR! 404 tarball, folder, http url, or git url.

npm ERR! A complete log of this run can be found in:

For contrast, it works just fine using npm@6:

:/moduleA $ npm i -g npm@6

removed 57 packages, changed 194 packages, and audited 436 packages in 2s

3 packages are looking for funding
  run `npm fund` for details

found 0 vulnerabilities
:/moduleA $ npm link moduleb
/moduleA/node_modules/moduleb -> /Users/tristan/.nvm/versions/node/v15.7.0/lib/node_modules/moduleb -> /moduleB
:/moduleA $ npm link modulec
/moduleA/node_modules/modulec -> /Users/tristan/.nvm/versions/node/v15.7.0/lib/node_modules/modulec -> /moduleC

Environment:

MacOS
npm@7

@tristanls tristanls added Bug thing that needs fixing Needs Triage needs review for next steps Release 7.x work is associated with a specific npm 7 release labels Jan 27, 2021
@tristanls tristanls changed the title [BUG] ~moduleA $ npm link moduleB attempts to install moduleA before linking moduleB (impossible to link more than one local module) [BUG] ~moduleA $ npm link moduleB attempts to install moduleA before linking moduleB Jan 27, 2021
@tristanls tristanls changed the title [BUG] ~moduleA $ npm link moduleB attempts to install moduleA before linking moduleB [BUG] Impossible to link more than one local module dependency. Jan 27, 2021
@Shadowfiend
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We just found an issue that may be related to this in npmv7: it looks like npm link now clears existing links if run for several modules in sequence. If you run one command, as in npm link moduleb modulec, it appears to link everything in one step---it's possible that may fix the issue you're seeing.

@tristanls
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Author

Confirmed that npm link moduleb modulec is a valid workaround:

:/moduleA $ npm link moduleb
npm ERR! code E404
npm ERR! 404 Not Found - GET https://registry.npmjs.org/modulec - Not found
npm ERR! 404 
npm ERR! 404  '[email protected]' is not in the npm registry.
...
:/moduleA $ npm link modulec
npm ERR! code E404
npm ERR! 404 Not Found - GET https://registry.npmjs.org/moduleb - Not found
npm ERR! 404 
npm ERR! 404  '[email protected]' is not in the npm registry.
npm ERR! 404 You should bug the author to publish it (or use the name yourself!)
...
:/moduleA $ npm link moduleb modulec

added 2 packages, and audited 5 packages in 635ms

found 0 vulnerabilities

Thank you.

@tristanls tristanls changed the title [BUG] Impossible to link more than one local module dependency. [BUG] Impossible to link more than one local module dependency one at a time. Feb 5, 2021
@darcyclarke darcyclarke removed the Needs Triage needs review for next steps label Feb 26, 2021
@tristanls
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Author

What's the reason for closing?

@joebnb
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joebnb commented Mar 19, 2021

same problem

if link a scoped module @scope/name1 at dir1 it will remove all dir1/node_modules/@scope/*

i just want add a link moudle, not rm -rf @scope/ dir then link this one

@CodeTroopers
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CodeTroopers commented Mar 23, 2021

Could you reopen this issue?
I have the same problem with npm 7.6.3

  • from depency @mycompany/B:

cd dist && npm link

  • from depency @mycompany/C:

cd dist && npm link

  • from main project @mycompany/A:

    npm link @mycompany/B
    Symlink @mycompany/B exists in node_modules
    npm link @mycompany/C
    Symlink @mycompany/C exists in node_modules
    but Symlink @mycompany/B is deleted in node_modules

This works well with npm 6.14.11

@livthomas
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We just found an issue that may be related to this in npmv7: it looks like npm link now clears existing links if run for several modules in sequence. If you run one command, as in npm link moduleb modulec, it appears to link everything in one step---it's possible that may fix the issue you're seeing.

@darcyclarke Could you please at least document this before closing this issue? There is nothing like that mentioned in the documentation of npm link command.

@darcyclarke
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Contributor

@tristanls apologies - I must have closed this while doing a larger sweep of issues (note: I rarely close without commenting unless it's obviously a bad issue or it's apart of a larger automated sweep); Apologese for the confusion. We'll dig in here & either do a better job at explaining how this works in the docs or get npm link to behave more like v6.

@darcyclarke darcyclarke reopened this Mar 31, 2021
@darcyclarke darcyclarke added Priority 2 secondary priority issue Priority 1 high priority issue and removed Priority 2 secondary priority issue labels Mar 31, 2021
ruyadorno added a commit to ruyadorno/cli that referenced this issue Jun 10, 2021
`npm link <pkg>` is meant to be used as a way to link a local package to
an install tree and it's very surprising to users that it may prune
extraneous deps from the project.

This change switches the default behavior to avoid pruning deps when
reifying the dependencies in npm link.

Fixes: npm#2554
@ruyadorno
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Contributor

hi @tristanls thanks for the thorough report!

I'm proposing a change that should fix the fact that other linked deps were being removed from the install tree when running npm link <pkg> multiple times.

With that in mind, I believe you should tweak your workflow to use npm link <pkg> --save if you want to avoid linked deps being pruned - it's a documented breaking change in npm7 for npm link not to store linked deps to package.json, so you should use that option in order to get a workflow similar to npm6.

Please let us know if you find any new problems! Thanks again 😊

ruyadorno added a commit to ruyadorno/arborist that referenced this issue Jun 10, 2021
When loading an actual tree sometimes extraneous deps were not being
properly marked as so, since they were not really marked as extraneous
at the moment of reify, so in order to be strictly correct we need to
recalculate deps at load-actual in order to make sure extraneous deps
are properly marked as such.

Related to: npm/cli#2554
@CodeTroopers
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@ruyadorno I don't undertstand why we should save linked package in the package.json. This is a bad workflow. Linking a package is used principaly in develop time to debug packages or sub packages. If the developper must save the linked package in the package.json, it could commit unintentionally the package as link instead of as real package.

wraithgar pushed a commit to ruyadorno/cli that referenced this issue Jun 11, 2021
`npm link <pkg>` is meant to be used as a way to link a local package to
an install tree and it's very surprising to users that it may prune
extraneous deps from the project.

This change switches the default behavior to avoid pruning deps when
reifying the dependencies in npm link.

Fixes: npm#2554

PR-URL: npm#3399
Credit: @ruyadorno
Close: npm#3399
Reviewed-by: @ljharb, @nlf
isaacs pushed a commit to ruyadorno/arborist that referenced this issue Jun 16, 2021
When loading an actual tree sometimes extraneous deps were not being
properly marked as so, since they were not really marked as extraneous
at the moment of reify, so in order to be strictly correct we need to
recalculate deps at load-actual in order to make sure extraneous deps
are properly marked as such.

Related to: npm/cli#2554

PR-URL: npm#289
Credit: @ruyadorno
Close: npm#289
Reviewed-by: @isaacs
feelepxyz added a commit to dependabot/dependabot-core that referenced this issue Jul 15, 2021
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  chore(linting): add bin and clean up lib/ls.js
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  chore(config): snapshot config descriptions
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  [#3455](npm/cli#3455)
  @npmcli/package-json refactor
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* [`fe4138381`](npm/cli@fe41383)
  `@npmcli/[email protected]`:
  * bin: allow turning off timer display with --timers=false
  * fix: do not try to inflate a fresh lockfile
  * fix(diff): walk target children if root is a link
  * chore: @npmcli/package-json refactor

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  `[email protected]`:
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  `[email protected]`:
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  fix(tests): mock writeFile in pack tests so we dont create 0 byte files in the repo
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    * feat: improved logging of cache status

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  `[email protected]`:
    * fix: trim whitespace from fetchSpec
    * fix: handle file: when root directory begins with a special character
* [`e92b5f2ba`](npm/cli@e92b5f2)
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    * breaking: complete refactor of caching. drops warning headers,
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    * fix: support url-encoded proxy authorization
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  `[email protected]`
    * breaking: drop handling of deprecated warning headers
    * docs: fix header type for npm-command
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* [`3d5df0082`](npm/cli@3d5df00)
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* [`0d1a9d787`](npm/cli@0d1a9d7)
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* [`c18626f04`](npm/cli@c18626f)
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* [`41099d395`](npm/cli@41099d3)
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* [`fde354669`](npm/cli@fde3546)
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* [`63a7635f7`](npm/cli@63a7635)
  [#3217](npm/cli#3217)
  feat(pack): add support to json config/output
  ([@mrmlnc](https://github.com/mrmlnc))

* [`faa12ccc2`](npm/cli@faa12cc)
  [#3253](npm/cli#3253)
  fix search description typos
  ([@juanpicado](https://github.com/juanpicado))
* [`2f5c28a68`](npm/cli@2f5c28a)
  [#3243](npm/cli#3243)
  fix(docs): autogenerate config docs for commands
  ([@isaacs](https://github.com/isaacs))

* [`ec256a14a`](npm/cli@ec256a1)
  `@npmcli/[email protected]`
* [`5f15aba86`](npm/cli@5f15aba)
  `[email protected]`
* [`b3add87e6`](npm/cli@b3add87)
  [#3262](npm/cli#3262)
  `[email protected]`:
    * fixed sso login token

* [`076420c14`](npm/cli@076420c)
  [#3231](npm/cli#3231)
  feat(publish): add workspace support
  ([@wraithgar](https://github.com/wraithgar))
* [`370b36a36`](npm/cli@370b36a)
  [#3241](npm/cli#3241)
  feat(fund): add workspaces support
  ([@ruyadorno](https://github.com/ruyadorno))

* [`0c18e4f77`](npm/cli@0c18e4f)
  `@npmcli/[email protected]`
* [`b551c6811`](npm/cli@b551c68)
  `[email protected]`

* [`de49f58f5`](npm/cli@de49f58)
  [#3216](npm/cli#3216)
  fix(contributing): link to proper cli repo
  ([@mrmlnc](https://github.com/mrmlnc))
* [`1d092144e`](npm/cli@1d09214)
  [#3203](npm/cli#3203)
  fix(packages): locale-agnostic string sorting
  ([@isaacs](https://github.com/isaacs))
* [`0696fca13`](npm/cli@0696fca)
  [#3209](npm/cli#3209)
  fix(view): fix non-registry specs
  ([@wraithgar](https://github.com/wraithgar))
* [`71ac93597`](npm/cli@71ac935)
  [#3206](npm/cli#3206)
  chore(github): Convert md issue template to yaml
  ([@lukehefson](https://github.com/lukehefson))
* [`6fb386d3b`](npm/cli@6fb386d)
  [#3201](npm/cli#3201)
  fix(tests): increase test fuzziness
  ([@wraithgar](https://github.com/wraithgar))
* [`f3a662fcd`](npm/cli@f3a662f)
  [#3211](npm/cli#3211)
  fix(tests): use config defaults
  ([@wraithgar](https://github.com/wraithgar))

* [`285976fd1`](npm/cli@285976f)
  `@npmcli/[email protected]`
  * fix(reify): properly save spec if prerelease
* [`f9f24d17c`](npm/cli@f9f24d1)
  `[email protected]`
  * fix(add): Specify 'en' locale to String.localeCompare
* [`cb9f17499`](npm/cli@cb9f174)
  `[email protected]`
  * force 'en' locale in string sorting
* [`24b4e4a41`](npm/cli@24b4e4a)
  `[email protected]`
  * Avoid locale-specific sorting issues
* [`1eb7e5c7d`](npm/cli@1eb7e5c)
  `@npmcli/[email protected]`
  * guard against locale-specific sorting
* [`a6a826067`](npm/cli@a6a8260)
  `[email protected]`:
  * fix(sort): avoid locale-dependent sorting issues

* [`701627c51`](npm/cli@701627c)
  [#3098](npm/cli#3098)
  feat(cache): Allow `add` to accept multiple specs
  ([@mjsir911](https://github.com/mjsir911))
* [`59171f030`](npm/cli@59171f0)
  [#3187](npm/cli#3187)
  feat(config): add workspaces boolean to user-agent
  ([@nlf](https://github.com/nlf))

* [`2c9b8713c`](npm/cli@2c9b871)
  [#3182](npm/cli#3182)
  fix(docs): fix broken links
  ([@wangsai](https://github.com/wangsai))
* [`88cbc8c44`](npm/cli@88cbc8c)
  [#3198](npm/cli#3198)
  fix(tests): reflect new libnpmexec logic

* [`d01ce5e13`](npm/cli@d01ce5e)
  `[email protected]`:
    * feat: add walk up dir lookup to satisfy local bins
* [`81c1dfaaa`](npm/cli@81c1dfa)
  `@npmcli/[email protected]`:
    * fix(add): save packages in the right place
    * fix(reify): do not clean up nodes with no parent
    * fix(audit): support alias specs & root package names
* [`87c2303ea`](npm/cli@87c2303)
  `@npmcli/[email protected]`:
    * fix(clone): Do not allow git replacement objects by default
* [`99ff40dff`](npm/cli@99ff40d)
  `[email protected]`:
    * feat(npmignore): Do not force include history, changelogs, notice
    * fix(package.json): add missing bin/index.js to files

* [`c371f183e`](npm/cli@c371f18)
  [#3137](npm/cli#3137)
  [#3140](npm/cli#3140)
  fix(ls): do not warn on missing optional deps
  ([@isaacs](https://github.com/isaacs))
* [`861f606c7`](npm/cli@861f606)
  [#3156](npm/cli#3156)
  fix(build): make prune rule work on case-sensitive file systems
  ([@lpinca](https://github.com/lpinca))

* [`fb79d89a0`](npm/cli@fb79d89)
  `[email protected]`
* [`ce3820043`](npm/cli@ce38200)
  `@npmcli/[email protected]`
    * fix: prevent and eliminate unnecessary duplicates
    * fix: support resolvable partial intersecting peerSets

* [`e479f1dac`](npm/cli@e479f1d)
  [#3146](npm/cli#3146)
  mention `directories.bin` in `bin`
  ([@felipecrs](https://github.com/felipecrs))

* [`7925cca24`](npm/cli@7925cca)
  `[email protected]`:
  * fix(registry): normalize manfest
* [`b61eac693`](npm/cli@b61eac6)
  [#3130](npm/cli#3130)
  `@npmcli/[email protected]`
* [`c74e67fc6`](npm/cli@c74e67f)
  [#3130](npm/cli#3130)
  `[email protected]`

* [`efdd7dd44`](npm/cli@efdd7dd)
  Remove unused and incorrectly documented `--always-auth` config definition
  ([@isaacs](https://github.com/isaacs))

* [`4c1f16d2c`](npm/cli@4c1f16d)
  [#3095](npm/cli#3095)
  feat(init): add workspaces support
  ([@ruyadorno](https://github.com/ruyadorno))

* [`42ca59eee`](npm/cli@42ca59e)
  [#3086](npm/cli#3086)
  fix(ls): do not exit with error when all problems are extraneous deps
  ([@nlf](https://github.com/nlf))
* [`2aecec591`](npm/cli@2aecec5)
  [#2724](npm/cli#2724)
  [#3119](npm/cli#3119)
  fix(ls): make --long work when missing deps
  ([@ruyadorno](https://github.com/ruyadorno))
* [`42e0587a9`](npm/cli@42e0587)
  [#3115](npm/cli#3115)
  fix(pack): refuse to pack invalid packument
  ([@wraithgar](https://github.com/wraithgar))
* [`1c4eff7b5`](npm/cli@1c4eff7)
  [#3126](npm/cli#3126)
  fix(logout): use isBasicAuth attribute
  ([@wraithgar](https://github.com/wraithgar))

* [`c93f1c39e`](npm/cli@c93f1c3)
  [#3101](npm/cli#3101)
  chore(docs): update view docs
  ([@wraithgar](https://github.com/wraithgar))
* [`c4ff4bc11`](npm/cli@c4ff4bc)
  [npm/statusboard#313](npm/statusboard#313)
  [#3109](npm/cli#3109)
  fix(usage): fix refs to ws shorthand
  ([@ruyadorno](https://github.com/ruyadorno))

* [`83166ebcc`](npm/cli@83166eb)
  `[email protected]`
    * feat(auth): set isBasicAuth
* [`e02bda6da`](npm/cli@e02bda6)
  `[email protected]`
    * feat(auth) load/send based on URI, not registry
* [`a0382deba`](npm/cli@a0382de)
  `@npmcli/[email protected]`
    * fix: windows ComSpec env variable name
* [`7f82ef5a8`](npm/cli@7f82ef5)
  `[email protected]`
* [`35e49b94f`](npm/cli@35e49b9)
  `@npmcli/[email protected]`
* [`95faf8ce6`](npm/cli@95faf8c)
  `[email protected]`
* [`17fffc0e4`](npm/cli@17fffc0)
  `[email protected]`
* [`1b5a213aa`](npm/cli@1b5a213)
  `[email protected]`
* [`9f83e6484`](npm/cli@9f83e64)
  `[email protected]`
* [`251f788c5`](npm/cli@251f788)
  `[email protected]`
* [`35873a989`](npm/cli@35873a9)
  `[email protected]`
* [`23e12b4d8`](npm/cli@23e12b4)
  `[email protected]`
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Labels
Bug thing that needs fixing Priority 1 high priority issue Release 7.x work is associated with a specific npm 7 release
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