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Merge branch 'galaxyproject:main' into master
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nomadscientist authored Jun 30, 2024
2 parents 2de10d4 + b7d1472 commit 16ce4b1
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2 changes: 1 addition & 1 deletion .github/workflows/google-form-faqs.yml
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Expand Up @@ -2,7 +2,7 @@ name: "[Cron] Update FAQs from Google Form"
on:
workflow_dispatch:
schedule:
- cron: '38 9 * * *'
- cron: '0 9 * * 1-5'
jobs:
runner-job:
runs-on: ubuntu-latest
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5 changes: 5 additions & 0 deletions CONTRIBUTORS.yaml
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Expand Up @@ -2000,6 +2000,11 @@ Shorla:
email: [email protected]
joined: 2021-10

shwdey:
name: Shweta Pandey
email: [email protected]
joined: 2024-06

simonbray:
name: Simon Bray
joined: 2019-05
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2 changes: 1 addition & 1 deletion _includes/help.html
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Expand Up @@ -27,7 +27,7 @@
{% icon feedback %} Galaxy Help Forum
</a>
<a class="dropdown-item" href="{{ site.gitter_url }}" title="Discuss on gitter">
{% icon gitter %} Discuss on Gitter
{% icon gitter %} Discuss on Matrix
</a>
</div>
</li>
212 changes: 212 additions & 0 deletions assets/images/workflowhub-icon.svg
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4 changes: 2 additions & 2 deletions topics/climate/tutorials/ocean-variables/tutorial.md
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Expand Up @@ -194,14 +194,14 @@ the "Project" Menu tab.
> <hands-on-title>Save your subset view</hands-on-title>
> 1. On the top left of your screen, you can see a red save button. Right-click on it.
> 2. In the pop-up screen go to the folder **ODV**, **galaxy**, **outputs**.
> 3. In **File name** rename your view (for example subset_Eutrophication_Med_profiles_2022), and **Save**.
> 3. In **File name** rename your view (for example Eutrophication_Med_profiles_2022_unrestricted_SNAPSHOT_2023-10-24T16-39-44), and **Save**.
{: .hands_on}
</div>
<div class="png" markdown="1">
> <hands-on-title>Save your subset map</hands-on-title>
> 1. Click right on the map and select **Save Plot As...**
> 2. In the pop-up screen go to the folder **ODV**, **galaxy**, **outputs**.
> 3. In **File name** rename your view (for example subset_Eutrophication_Med_profiles_2022_1)
> 3. In **File name** rename your view (for example Eutrophication_Med_profiles_2022_unrestricted_SNAPSHOT_2023-10-24T16-39-44)
> 4. In **Files of type** select `PNG (*.png *.PNG)` and **Save** then **OK** and **OK**.
{: .hands_on}
</div>
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Expand Up @@ -10,11 +10,11 @@ time_estimation: 0H30M
key_points:
- From WFS webservice, you can now access GIS remote data, build a query to select a subpart of the data, and import it to Galaxy through QGIS Galaxy interactive tool.
tags:
- earth-system
- GIS
- Geographical Information System
- WFS
- Spatial data
- QGIS
- Maps
- OGC
contributions:
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6 changes: 3 additions & 3 deletions topics/ecology/tutorials/ndvi_openeo/tutorial.md
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Expand Up @@ -78,7 +78,7 @@ Interactive tools work differently than classical tools as it allows the user to

> <hands-on-title> Launch the interactive tool </hands-on-title>
>
> 1. {% tool [Copernicus Data Space Ecosystem](interactive_tool_copernicus) %} with the following parameters:
> 1. {% tool [Copernicus Data Space Ecosystem](interactive_tool_copernicus_notebook) %} with the following parameters:
> - *"Do you already have a notebook?"*: `Start with a fresh notebook`
> - *"Include data into the environment - optional "*: You don't need anything
> 2. Click on **Run Tool**
Expand All @@ -103,9 +103,9 @@ Interactive tools work differently than classical tools as it allows the user to
> ![Image of the successful connection](../../images/ndvi_openeo_holoviz/connection_ok.png)
> 8. Now, you can go back on your jupyterlab and execute the rest of the notebook.
> 9. Once you executed the entire notebook you should have a new folder in the left pannel named **ndvi-results** go in it.
> 10. Select the 3 files there and click right, and then copy
> 10. Select the 3 files (timeseries-basic.csv, timeseries-masked.csv, timeseries-smoothed.csv) there and click right, and then copy
> ![The copy command on the 3 files in the ndvi-results folder](../../images/ndvi_openeo_holoviz/copy_paste.png)
> 11. Then go back to the root of your path and go in the **ouputs** folder. There you can click right and paste the 3 NDVI files.
> 11. Then go back to the root of your path and go in the **ouputs** folder. There you can click right and paste the 3 NDVI files (timeseries-basic.csv, timeseries-masked.csv, timeseries-smoothed.csv).
> ![The resulting 3 files in the outputs folder](../../images/ndvi_openeo_holoviz/outputs.png)
> 12. This part is now finished you just have to correctly close this notebook. On the top left click on **files** and then on **Shut down**.
> ![The shut down button to correctly close the jupyterlab](../../images/ndvi_openeo_holoviz/shut_down.png)
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