Add depends_on_tmb option to r cmd check. #106

[k-doering-NOAA]

This addresses #106.

Basically, it adds an option called depends_on_tmb to the r-cmd-check workflow that downloads the source version of Matrix on Mac and Windows to solve a complicated issue that affects TMB models. See more details in this google groups thread.

Here's an example workflow that calls r-cmd-check with the depends_on_tmb option set to true (note: replace @main with @depends-on-tmb to test the changes on this branch:

# Run r cmd check
name: call-r-cmd-check
on:
  push:
jobs:
  call-workflow:
    uses: nmfs-fish-tools/ghactions4r/.github/workflows/r-cmd-check.yml@main
    with:
      depends_on_tmb: true

[k-doering-NOAA]

@Andrea-Havron-NOAA this is ready to test! Also, if you could look through the code changes, too, that would be great. Feel free to note anything that doesn't seem right, or if you think some names should be changed (e.g., we don't need to call this option depends_on_tmb if there is a better idea).

Note: I do need to document this option on the readme.

[Andrea-Havron-NOAA]

I tested this on clustTMB and the r-cmd-check github action now passes. The calc-coverage gha is still failing due to the same Matrix/TMB version conflict. A similar fix will need to be applied for that workflow, but this can be made a separate issue.

[k-doering-NOAA]

@Andrea-Havron-NOAA thanks for testing! I'll go ahead and merge this in and make a new issue for the calc coverage workflow.