Code

Add type annotations#656

Code

Merged

yarikoptic merged 35 commits intomasternipy/heudiconv:masterfrom gh-653nipy/heudiconv:gh-653Copy head branch name to clipboardApr 29, 2023

+1,823-1,163

Commits

Commits on Apr 13, 2023

• Start type-annotating

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• Type-checking workflow

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• Type-annotate main.py

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• Type-annotate utils.py

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• Type-annotate parser.py

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• Type-annotate fields of StudySessionInfo

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• Type-annotate cli/monitor.py

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• Type-annotate cli/run.py

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• Type-annotate bids.py

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• Add missing from __future__ import annotations

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• Further mypy config

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• Miscellaneous typing fixes

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• Type-check tests

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• Type-annotate dicoms.py

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• Type-annotate fields of SeqInfo

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• Type-annotate heuristics/

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• Refinements

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• Make mypy ignore nibabel under Python 3.7

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• Type-annotate external/

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• More refinements

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• Type-annotate most of convert.py

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Commits on Apr 14, 2023

• Everything is annotated now

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Commits on Apr 25, 2023

• StudySessionInfo.session is not supposed to be an int.

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• Fix a test bug

  jwodder

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• Determine types of BIDS sidecar fields

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• Declare type of nifti_header

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• Adjust an annotation

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• Just Wrapper, not MosaicWrapper

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Commits on Apr 26, 2023

• BF: pass values as is, not *it into lgr.warning

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  yarikoptic

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• Fix up example.py heuristic to make clear where full series id and where just number to be used

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• cast output of custom_grouping into expected Dict

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• Do type checking using python 3.9

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• Fix the problem the right way

  jwodder

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• Type narrow some Anys

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  yarikoptic

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• Make Anys in SeqInfo into Optional[str] + fix treat_age for None

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