Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Improve fieldmap visualisation in the reports #4

Closed
chrisgorgo opened this issue Apr 18, 2017 · 2 comments · Fixed by #28
Closed

Improve fieldmap visualisation in the reports #4

chrisgorgo opened this issue Apr 18, 2017 · 2 comments · Fixed by #28
Labels
enhancement New feature or request reports

Comments

@chrisgorgo
Copy link
Contributor

  • use cold and hot colormap
  • show the mm displacement field with color bar and scale
  • show outline of the brain for reference
@oesteban
Copy link
Member

oesteban commented May 4, 2017

Do you have any example of what you want to see?

@oesteban oesteban transferred this issue from nipreps/fmriprep Jul 9, 2019
@oesteban oesteban added enhancement New feature or request reports labels Aug 6, 2019
oesteban added a commit to oesteban/sdcflows that referenced this issue Aug 6, 2019
@oesteban
Copy link
Member

oesteban commented Aug 6, 2019

See #28 (comment) to see how it looks now:

  • use cold and hot colormap
  • show the mm displacement field with color bar and scale
  • show outline of the brain for reference

The displacement field is not shown because this plot shows field inhomogeneity in Hz. To know how that converts into a displacements field, one needs to know the EPI acquisition details (i.e., imaging parameters of the fMRI or dMRI dataset that the correction will apply to).

oesteban added a commit that referenced this issue Oct 10, 2019
oesteban added a commit that referenced this issue Nov 23, 2019
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request reports
Projects
None yet
Development

Successfully merging a pull request may close this issue.

2 participants