Scn2a behavioral analysis

Building analysis tools and pipeline for Scn2a behavioral phenotyping results.

Name		Name	Last commit message	Last commit date
Latest commit History 57 Commits
figures/2024July		figures/2024July
vocalizations		vocalizations
.gitattributes		.gitattributes
.gitignore		.gitignore
20240917_scratch_sniffDurationByFollowingBehavior.ipynb		20240917_scratch_sniffDurationByFollowingBehavior.ipynb
20250131_sniffBeforeHuddleInRejectionAssays_BarbaraQuals.ipynb		20250131_sniffBeforeHuddleInRejectionAssays_BarbaraQuals.ipynb
240730_proto_plottingCDFs.ipynb		240730_proto_plottingCDFs.ipynb
240811_pipeline_plottingCDFs.ipynb		240811_pipeline_plottingCDFs.ipynb
240812_proto_PCAs.ipynb		240812_proto_PCAs.ipynb
240813_pipeline_PCA.ipynb		240813_pipeline_PCA.ipynb
240820_pipeline_revisedCDFs.ipynb		240820_pipeline_revisedCDFs.ipynb
240823_scratch_Markov.ipynb		240823_scratch_Markov.ipynb
240827_scratch_homecageHuddleDuration.ipynb		240827_scratch_homecageHuddleDuration.ipynb
240916_scratch_sniffToHuddleLatency.ipynb		240916_scratch_sniffToHuddleLatency.ipynb
240917_proto_transitionMatrix.ipynb		240917_proto_transitionMatrix.ipynb
240924_scratch_sniffToHuddlePlotsCommittee.ipynb		240924_scratch_sniffToHuddlePlotsCommittee.ipynb
241112_scratch_WThuddleTimes-introVreunion.ipynb		241112_scratch_WThuddleTimes-introVreunion.ipynb
README.md		README.md
Scn2aX1Nov22_Key.xlsx		Scn2aX1Nov22_Key.xlsx
all_annotations.csv		all_annotations.csv
centerViolation_log_PPT.csv		centerViolation_log_PPT.csv
gap_log_PPT.csv		gap_log_PPT.csv
gap_log_aggression.csv		gap_log_aggression.csv
gap_log_introduction.csv		gap_log_introduction.csv
gap_log_intros.csv		gap_log_intros.csv
gap_log_reunion.csv		gap_log_reunion.csv
gap_log_timedMating.csv		gap_log_timedMating.csv
metadata_TMs.csv		metadata_TMs.csv
metadata_aggressions.csv		metadata_aggressions.csv
metadata_all_v1.xlsx		metadata_all_v1.xlsx
metadata_intros_v1.xlsx		metadata_intros_v1.xlsx
metadata_intros_v2.csv		metadata_intros_v2.csv
metadata_intros_v3.csv		metadata_intros_v3.csv
metadata_intros_v4.csv		metadata_intros_v4.csv
metadata_pairblank_v1.xlsx		metadata_pairblank_v1.xlsx
metadata_ppts.csv		metadata_ppts.csv
metadata_ppts_v2.csv		metadata_ppts_v2.csv
metadata_reunions.csv		metadata_reunions.csv
overlap_log_PPT.csv		overlap_log_PPT.csv
overlap_log_aggression.csv		overlap_log_aggression.csv
overlap_log_introduction.csv		overlap_log_introduction.csv
overlap_log_intros.csv		overlap_log_intros.csv
overlap_log_reunion.csv		overlap_log_reunion.csv
overlap_log_timedMating.csv		overlap_log_timedMating.csv
pipeline_NWB-intros.ipynb		pipeline_NWB-intros.ipynb
pipeline_metadata-PPTs.ipynb		pipeline_metadata-PPTs.ipynb
pipeline_metadata-SRs.ipynb		pipeline_metadata-SRs.ipynb
pipeline_metadata-TMs.ipynb		pipeline_metadata-TMs.ipynb
pipeline_metadata-aggression.ipynb		pipeline_metadata-aggression.ipynb
proto_NWB-PPTs.ipynb		proto_NWB-PPTs.ipynb
proto_NWB-all.ipynb		proto_NWB-all.ipynb
proto_NWBpipeline.ipynb		proto_NWBpipeline.ipynb
proto_getBoxFiles.ipynb		proto_getBoxFiles.ipynb
proto_latency-plots.ipynb		proto_latency-plots.ipynb
proto_make-behavior-specific-tables-for-NWB.ipynb		proto_make-behavior-specific-tables-for-NWB.ipynb
proto_moreLatencyPlots.ipynb		proto_moreLatencyPlots.ipynb
scratch_BoxSDK.ipynb		scratch_BoxSDK.ipynb
scratch_findIncompleteTimelines.ipynb		scratch_findIncompleteTimelines.ipynb
scratch_huddleLength.ipynb		scratch_huddleLength.ipynb
scratch_longitudinal-analysis.ipynb		scratch_longitudinal-analysis.ipynb
scratch_mountCounts.ipynb		scratch_mountCounts.ipynb
scratch_testIntroNWBFiles.ipynb		scratch_testIntroNWBFiles.ipynb

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