Question about automatically collapsing filter selection in html

[noeliaferruz]

Hi,
I am rendering on a web a protein and a ligand, with the residues around the ligand as well.
This is the code to select the residues around the ligand:

var selection = new NGL.Selection( "not protein and not water");
var radius = 4;
var atomSet = obj[1].structure.getAtomSetWithinSelection( selection, radius );
 // expand selection to complete groups
var atomSet2 = obj[1].structure.getAtomSetWithinGroup( atomSet );
var residues2 = obj[1].addRepresentation("licorice",{
sele: atomSet2.toSeleString(),
})

The selection looks too large in the web though. The users can of course collapse it by hand, but I was wondering if there's a way to automatically collapse it upon loading? Something like, collapse=True (this didn't work)?

Thanks

[fredludlow]

Do you mean go from a list of atom IDs to something like ":A and 1-4 or 7 or 10". I don't know of a way to do this at the moment but it would certainly be a nice addition. I guess you could fairly easily create a naive implementation (walk through models, chains, residues, atoms and build a big nested and/or statement). For a more thorough job, a quick google suggests the relevant term might be rewriting but it's not an area I have any knowledge of...

[noeliaferruz]

Hey thank you, eventually found a workaround!

[gph82]

a bit late to the party, but, what was the workaround? I have the same question...

[noeliaferruz]

HI Guillermo!

I actually don't remember. Shortly after I translated the project to mol*.

[gph82]

We're on our way of doing that also, but for the moment it's easier to build on existing nfg scripts. Thanks for the quick reply!

…

Sent from my Galaxy

-------- Original message -------- From: Noelia Ferruz <[email protected]> Date: 1/7/21 21:09 (GMT+01:00) To: nglviewer/ngl <[email protected]> Cc: "Pérez Hernández, Guillermo" <[email protected]>, Comment <[email protected]> Subject: [ext] Re: [nglviewer/ngl] Question about automatically collapsing filter selection in html (#745) HI Guillermo! I actually don't remember. Shortly after I translated the project to mol*. — You are receiving this because you commented. Reply to this email directly, view it on GitHub<#745 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ABZLONBODD2EOJML4CQNMXTSYYIH5ANCNFSM4M5WH3PA>.