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Include Changes for specification V2.1 #137

Merged
merged 30 commits into from
Feb 26, 2025
Merged

Include Changes for specification V2.1 #137

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96c65c2
correct allowed paths for tool description #110
caroott Jul 2, 2024
e538379
fix clw user guide links
caroott Jul 2, 2024
fc95c79
add metadata section to run and workflow #110
caroott Jul 2, 2024
205c0c2
update arc example structure (cwl files)
caroott Jul 18, 2024
929a950
link to example arc structure for file locations
caroott Jul 18, 2024
b6f6e1b
replace root arc.cwl with run.cwl
caroott Jul 18, 2024
a0b0391
add metadata specification
caroott Sep 2, 2024
07973a0
adapt must/should/may usage for cwl section
caroott Sep 2, 2024
29f9ea3
capitalize must
caroott Sep 3, 2024
af549c6
Extend datamap logic with alternative worksheet implementation
Freymaurer Jul 8, 2024
6f2a332
Propose another declaration of datamap sheet.
Freymaurer Jul 8, 2024
230b6dd
Unify format between datamap and annotation sheets #113
Freymaurer Jul 15, 2024
139d3e1
fix links :bug:
Freymaurer Jul 15, 2024
32e1890
small adjustments to ARC publishability
HLWeil Aug 21, 2024
3ef8402
add URL pattern to data path annotation
HLWeil Aug 15, 2024
d9aa480
sort file location patterns by constraints
HLWeil Sep 5, 2024
e8d3ada
fix assay to study copy error of datamap paragraph
HLWeil Sep 6, 2024
423664b
overhauled the formatting specification of ontology annotations in an…
HLWeil Sep 6, 2024
3b3a295
small fixes to OA and Unit sections according to requests in PR #120
HLWeil Sep 9, 2024
975f547
move individual run description
caroott Sep 9, 2024
f7799e2
add relative path clarification
caroott Sep 9, 2024
2b1c684
clarify metadata annotation and type mapping
caroott Sep 9, 2024
d75f18d
remove redundant individual runs section
caroott Sep 10, 2024
a25feca
add clarifying sentence about metadata annotation in cwl
caroott Sep 10, 2024
7bbc1e0
Merge pull request #111 from caroott/CWL
kMutagene Sep 10, 2024
107c5e6
Merge pull request #117 from nfdi4plants/URL-pattern
HLWeil Sep 11, 2024
2272b88
some adjustments to ontology annotation headers
HLWeil Sep 11, 2024
3904fb1
Merge pull request #120 from nfdi4plants/fixes
HLWeil Sep 11, 2024
1635955
small fix of run.cwl filename
HLWeil Oct 29, 2024
df20571
Update ARC specification.md
kMutagene Feb 26, 2025
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