Merge pull request #23 from mashehu/break-on-error

Fail instead of warn, when `nextflow help` doesn't work
nf-core · Oct 11, 2023 · 441990d · 441990d
2 parents 8e5e5db + 7e43c4a
commit 441990d
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/src/main.ts b/src/main.ts
@@ -94,9 +94,8 @@ async function run(): Promise<void> {
     await exec.exec("nextflow", ["help"])
   } catch (e: unknown) {
     if (e instanceof Error) {
-      core.warning(
-        "Nextflow appears to have installed correctly, but an error was thrown while running it."
-      )
+      // fail workflow if Nextflow run does not succeed
+      core.setFailed(`Could not run 'nextflow help'. Error: ${e.message}`)
     }
   }
 }