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Fix problematic star index channel structure if params.star_index is provided #412

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merged 1 commit into from
Dec 29, 2024
Merged

Fix problematic star index channel structure if params.star_index is provided #412

merged 1 commit into from
Dec 29, 2024

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nictru
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@nictru nictru commented Dec 28, 2024

With the channel.of that was previously used, a queue channel with a single entry was created. Thus, only one sample was processed. Switched to channel.value, so that a value channel is created, fixing this problematic behavior.

@nictru nictru changed the title Fix problematic star index channel structure if params.star_index is … Fix problematic star index channel structure if params.star_index is provided Dec 28, 2024
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

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github-actions bot commented Dec 28, 2024 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 1aaac5f

+| ✅ 214 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 3.0.0
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-12-28 16:18:47

@fmalmeida fmalmeida self-requested a review December 29, 2024 07:39
@nictru nictru merged commit 8d2615f into dev Dec 29, 2024
15 checks passed
@nictru nictru deleted the star-index-channel-structure branch December 29, 2024 07:54
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@fmalmeida fmalmeida fmalmeida approved these changes

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