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Dev #472

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Dev #472

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0f21204
fix interval name and boolean flag
Dec 6, 2021
7fff15e
remove boolean flag
Dec 6, 2021
55200c8
rename steps to match schema
Dec 6, 2021
8ca5701
print
Dec 6, 2021
e72ca1a
print
Dec 6, 2021
074d0c5
print
Dec 6, 2021
4e8929c
print
Dec 6, 2021
6447d98
print
Dec 6, 2021
8d18831
rename if statements to match step_schema
Dec 6, 2021
fa7b7d0
rename variantcalling -> variant_calling
Dec 6, 2021
d601028
intervals_bed for all tuples
Dec 6, 2021
805867f
match argument order
Dec 6, 2021
de90b04
output intervals_bed
Dec 6, 2021
b2f25b6
print
Dec 6, 2021
d08fc82
remove forced '_'
Dec 6, 2021
1531935
print
Dec 6, 2021
9c2169b
print
Dec 6, 2021
c02377a
print
Dec 6, 2021
ab896a4
fix variable order
Dec 6, 2021
7ec606f
uncomment germline variant_calling options
Dec 6, 2021
60603d4
uncomment germline variant_calling options
Dec 6, 2021
ea4493a
uncomment germline variant_calling options
Dec 6, 2021
5a94334
uncomment germline variant_calling options
Dec 6, 2021
6dc29ed
uncomment germline variant_calling options
Dec 6, 2021
b34b950
uncomment germline variant_calling options
Dec 6, 2021
de203d3
publish_files
Dec 6, 2021
bd8f873
format
Dec 6, 2021
abf3d73
format
Dec 6, 2021
0f84d22
format
Dec 6, 2021
2de8fd9
format
Dec 6, 2021
25026e1
format
Dec 6, 2021
9137a7c
format
Dec 6, 2021
95a92a6
format
Dec 6, 2021
6faf726
format
Dec 6, 2021
7ff18e3
format
Dec 6, 2021
bd64480
format
Dec 6, 2021
95621fc
format
Dec 6, 2021
5175138
format
Dec 6, 2021
466a83f
format
Dec 6, 2021
352092d
format
Dec 6, 2021
19c17f5
format
Dec 6, 2021
73f9831
format
Dec 6, 2021
3153e93
format
Dec 6, 2021
f173d38
format
Dec 6, 2021
40bd4e3
linting
Dec 7, 2021
94313fc
linting
Dec 7, 2021
d27a161
Merge pull request #1 from nickhsmith/GHGA
nickhsmith Dec 8, 2021
8212e5d
update publishDir
Dec 13, 2021
935d40f
linting
Dec 13, 2021
a08ed0f
Merge branch 'dev' into dev
nickhsmith Dec 13, 2021
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1 change: 1 addition & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -7,3 +7,4 @@ results/
testing/
testing*
*.pyc
*.swp
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