Code

Add UMI reads processing capability#145

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Merged

maxulysse merged 26 commits intonf-core:devnf-core/sarek:devfrom lescai:umiCopy head branch name to clipboardJul 22, 2020

+190-10

Commits

Commits on Mar 4, 2020

• added software to environment file

  

  Francesco

  committed
  16df96b

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• added UMI options to param help

  

  Francesco

  committed
  d55306f

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• split inputreads into an additional channel for UMI processing

  

  Francesco

  committed
  138f217

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• added UMI code block

  

  Francesco

  committed
  31b962d

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• connected UMI output to mapping process

  

  Francesco

  committed
  2a46042

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• corrected missing tuple

  

  Francesco

  committed
  587793c

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• fixed reference in umi file mapping

  

  Francesco

  committed
  7dfe534

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• fixing channel used twice for fasta by sentieon

  

  Francesco

  committed
  1446f42

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• wrongly duplicated channel with typo

  

  Francesco

  committed
  e13c9c1

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Commits on Mar 5, 2020

• using ch_fasta as in mapping for umi mapping

  

  Francesco

  committed
  494899a

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• reduced test config for laptop run

  

  Francesco

  committed
  5c6e40a

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• added documentation for UMI input options

  

  Francesco

  committed
  a3cd712

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• improved helper

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  lescai

  and

  maxulysse

  authored
  f74a96e

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• Update docs/usage.md

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  lescai

  and

  maxulysse

  authored
  884ef5d

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• Apply suggestions from code review

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  lescai

  and

  maxulysse

  authored
  9ee778b

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• Update main.nf

  lescai

  authored
  1c7e2cb

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• Update docs/usage.md

  lescai

  authored
  ae65b28

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• Update main.nf

  lescai

  authored
  f92fb03

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• Update docs/usage.md

  lescai

  authored
  b5d07b9

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Commits on Mar 6, 2020

• updated changelog

  

  Francesco

  committed
  5a8ce62

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• Merge branch 'umi' of github.com:nibscles/sarek into umi

  

  Francesco

  committed
  f205ad2

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• Merge branch 'dev' into umi

  maxulysse

  authored
  e0ea704

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• Merge branch 'dev' into umi

  maxulysse

  authored
  568b677

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Commits on Jul 20, 2020

• Merge branch 'dev' into umi

  maxulysse

  authored
  6de29f0

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• Apply suggestions from code review

  maxulysse

  authored
  f4e8a78

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Commits on Jul 22, 2020

• Apply suggestions from code review

  maxulysse

  authored
  47c7bfc

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