Merge pull request #1280 from nf-core/update_link_to_SentieonDNAscope…

…Model

Updating link to sentieonDNAscopeModel file

CHANGELOG.md

@@ -9,11 +9,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Added
 
-- [#1193](https://github.com/nf-core/sarek/pull/1193) - Adding support for Sentieon's DnaScope for germline variant-calling including joint-germline.
+- [#1193](https://github.com/nf-core/sarek/pull/1193) - Adding support for Sentieon's DnaScope for germline variant-calling including joint-germline
 - [#1271](https://github.com/nf-core/sarek/pull/1271) - Back to dev
 
 ### Changed
 
+- [#1280](https://github.com/nf-core/sarek/pull/1280) - Replacing link to `SentieonDNAscopeModel1.1.model` in Sentieon's S3 with link to same file in igenomes' S3
+
 ### Fixed
 
 - [#1277](https://github.com/nf-core/sarek/pull/1277) - Fix null value issue for Mutect2 joint calling

nextflow.config

@@ -70,7 +70,7 @@ params {
     joint_mutect2                     = false // if true, enables patient-wise multi-sample somatic variant calling
     only_paired_variant_calling       = false // if true, skips germline variant calling for normal-paired sample
     sentieon_dnascope_emit_mode       = "variant" // default value for Sentieon dnascope
-    sentieon_dnascope_model           = "https://s3.amazonaws.com/sentieon-release/other/SentieonDNAscopeModel1.1.model"
+    sentieon_dnascope_model           = "s3://ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/Sentieon/SentieonDNAscopeModel1.1.model"
     sentieon_dnascope_pcr_indel_model = "CONSERVATIVE"
     sentieon_haplotyper_emit_mode     = "variant" // default value for Sentieon haplotyper
     wes                               = false // Set to true, if data is exome/targeted sequencing data. Used to use correct models in various variant callers