Merge pull request #839 from maxulysse/dev_aws_regions

 Get read of copyTo

CHANGELOG.md

@@ -47,6 +47,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [#817](https://github.com/nf-core/sarek/pull/817) - Fix CNVKit run on tumor-only sample to be run on all samples
 - [#828](https://github.com/nf-core/sarek/pull/817) - Fix issue [#763](https://github.com/nf-core/sarek/issues/763) to run variantcalling when starting form step recalibration
 - [#837](https://github.com/nf-core/sarek/pull/837) - Fix Freebayes config selector after subworkflow renaming
+- [#839](https://github.com/nf-core/sarek/pull/839) - Remove `copyTo` method that fails on S3 when the source and destination buckets are in different regions
 
 ### Deprecated
 

workflows/sarek.nf

@@ -139,13 +139,6 @@ if (params.tools && (params.tools.split(',').contains('ascat') || params.tools.s
     }
 }
 
-// Save AWS IGenomes file containing annotation version
-def anno_readme = params.genomes[params.genome]?.readme
-if (anno_readme && file(anno_readme).exists()) {
-    file("${params.outdir}/genome/").mkdirs()
-    file(anno_readme).copyTo("${params.outdir}/genome/")
-}
-
 /*
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     IMPORT LOCAL MODULES/SUBWORKFLOWS