add: show results in CI tests

nf-core · Oct 22, 2020 · 39753c8 · 39753c8
1 parent dc85282
commit 39753c8
Showing 1 changed file with 16 additions and 0 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -31,6 +31,8 @@ jobs:
       - name: Run pipeline with test data
         run: |
           nextflow run ${GITHUB_WORKSPACE} -profile test,docker
+      - name: Show results
+        run: ls -lR results
 
   aligner:
     name: Run aligner tests
@@ -51,6 +53,8 @@ jobs:
           NXF_VER: '20.07.1'
       - name: Run ${{ matrix.profile }} test
         run: nextflow run ${GITHUB_WORKSPACE} -profile test,docker --aligner ${{ matrix.aligner }}
+      - name: Show results
+        run: ls -lR results
 
   germline:
     name: Run input from a folder test and restart from step tests
@@ -71,14 +75,24 @@ jobs:
           NXF_VER: '20.07.1'
       - name: Get test data
         run: git clone --single-branch --branch sarek https://github.com/nf-core/test-datasets.git data
+      - name: Show results
+        run: ls -lR results
       - name: Run germline test with ${{ matrix.markduplicates }} --step mapping
         run: nextflow run ${GITHUB_WORKSPACE} -profile test,docker ${{ matrix.markduplicates }} --input data/testdata/tiny/normal --save_bam_mapped
+      - name: Show results
+        run: ls -lR results
       - name: Run germline test with ${{ matrix.markduplicates }} --step prepare_recalibration
         run: nextflow run ${GITHUB_WORKSPACE} -profile test,docker ${{ matrix.markduplicates }} --input=false --step prepare_recalibration -resume
+      - name: Show results
+        run: ls -lR results
       - name: Run germline test with ${{ matrix.markduplicates }} --step recalibrate
         run: nextflow run ${GITHUB_WORKSPACE} -profile test,docker ${{ matrix.markduplicates }} --input=false --step recalibrate -resume
+      - name: Show results
+        run: ls -lR results
       - name: Run germline test with ${{ matrix.markduplicates }} --step variantCalling
         run: nextflow run ${GITHUB_WORKSPACE} -profile test,docker ${{ matrix.markduplicates }} --input=false --step variantCalling
+      - name: Show results
+        run: ls -lR results
 
   # annotation:
   #   env:
@@ -172,3 +186,5 @@ jobs:
           NXF_VER: '20.07.1'
       - name: Run ${{ matrix.tool }} test
         run: nextflow run ${GITHUB_WORKSPACE} -profile test_tool,docker --tools ${{ matrix.tool }} ${{ matrix.intervals }}
+      - name: Show results
+        run: ls -lR results