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Correct Nextflow schema entry for Isofox read length #61

Merged
merged 1 commit into from
Jun 19, 2024
Merged

Correct Nextflow schema entry for Isofox read length #61

merged 1 commit into from
Jun 19, 2024

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scwatts
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@scwatts scwatts commented Jun 19, 2024

@scwatts scwatts requested a review from alexiswl June 19, 2024 08:55
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github-actions bot commented Jun 19, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit c0b8155

+| ✅ 177 tests passed       |+
#| ❔   5 tests were ignored |#
!| ❗  15 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yml
  • nextflow_config - Config manifest.version should end in dev: 1.0.0
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • schema_params - Schema param panel not found from nextflow config
  • schema_params - Schema param genome_version not found from nextflow config
  • schema_params - Schema param genome_type not found from nextflow config
  • schema_params - Schema param ref_data_hmf_data_path not found from nextflow config
  • schema_params - Schema param ref_data_panel_data_path not found from nextflow config
  • schema_params - Schema param ref_data_virusbreakenddb_path not found from nextflow config
  • schema_params - Schema param ref_data_hla_slice_bed not found from nextflow config

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-06-19 08:56:10

@scwatts scwatts merged commit 26abf3f into dev Jun 19, 2024
4 checks passed
@scwatts scwatts deleted the fix-nextflow-schema branch June 19, 2024 08:59
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@alexiswl alexiswl alexiswl approved these changes

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isofox_read_length does not have a 'type' attribute
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@scwatts @alexiswl