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scwatts committed Mar 16, 2024
1 parent 60f77d8 commit b978910
Showing 1 changed file with 9 additions and 9 deletions.
18 changes: 9 additions & 9 deletions modules/local/neo/Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -3,20 +3,20 @@ FROM mambaorg/micromamba:0.24.0
USER root

RUN \
apt-get update && \
apt-get install -y procps wget && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
apt-get update && \
apt-get install -y procps wget && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*

RUN \
mkdir -p /opt/neo/ && \
wget -O /opt/neo/neo.jar 'https://github.com/hartwigmedical/hmftools/releases/download/neo-v1.2_beta/neo_v1.2_beta.jar'
mkdir -p /opt/neo/ && \
wget -O /opt/neo/neo.jar 'https://github.com/hartwigmedical/hmftools/releases/download/neo-v1.2_beta/neo_v1.2_beta.jar'

USER mambauser

RUN \
micromamba install -y -n base -c bioconda -c conda-forge \
'openjdk >=8' && \
micromamba clean --all --yes
micromamba install -y -n base -c bioconda -c conda-forge \
'openjdk >=8' && \
micromamba clean --all --yes

ENV PATH="/opt/conda/bin:/opt/conda/condabin:${PATH}"

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