Merge pull request #58 from nf-core/bump-sage-version

Bump SAGE to 3.4.4
nf-core · Jun 12, 2024 · 66ce9be · 66ce9be
2 parents 6c0fbb6 + 15a9810
commit 66ce9be
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/modules/local/sage/append/main.nf b/modules/local/sage/append/main.nf
@@ -4,8 +4,8 @@ process SAGE_APPEND {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.3--hdfd78af_0' :
-        'biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.4--hdfd78af_0' :
+        'biocontainers/hmftools-sage:3.4.4--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(vcf), path(bam), path(bai)

diff --git a/modules/local/sage/germline/main.nf b/modules/local/sage/germline/main.nf
@@ -4,8 +4,8 @@ process SAGE_GERMLINE {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.3--hdfd78af_0' :
-        'biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.4--hdfd78af_0' :
+        'biocontainers/hmftools-sage:3.4.4--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(tumor_bam), path(normal_bam), path(tumor_bai), path(normal_bai)

diff --git a/modules/local/sage/somatic/main.nf b/modules/local/sage/somatic/main.nf
@@ -6,8 +6,8 @@ process SAGE_SOMATIC {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.3--hdfd78af_0' :
-        'biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.4--hdfd78af_0' :
+        'biocontainers/hmftools-sage:3.4.4--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(tumor_bam), path(normal_bam), path(tumor_bai), path(normal_bai)