Do not allow donor without normal

nf-core · Sep 9, 2024 · 2c20a1e · 2c20a1e
1 parent ee5209e
commit 2c20a1e
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/lib/Utils.groovy b/lib/Utils.groovy
@@ -267,6 +267,13 @@ class Utils {
 
             }
 
+            // Do not allow donor sample without normal sample
+            if (Utils.hasDonorDna(meta) && ! Utils.hasNormalDna(meta)) {
+                log.error "a donor sample but not normal sample was found for ${meta.group_id}\n\n" +
+                    "Analysis with a donor sample requires a normal sample."
+                Nextflow.exit(1)
+            }
+
             // Apply some required restrictions to targeted mode
             if (run_config.mode === Constants.RunMode.TARGETED) {