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Refactor Sentieon #5945

Merged
merged 12 commits into from
Jul 19, 2024
Merged

Refactor Sentieon #5945

merged 12 commits into from
Jul 19, 2024

Commits on Jul 17, 2024

  1. refactor: Clean up the logic and let Sentieon figure it out

    @edmundmiller
    edmundmiller committed Jul 17, 2024
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  2. refactor: Remove Sentieon license server IP check

    @edmundmiller
    edmundmiller committed Jul 17, 2024
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  3. fix: Add a -n

    @edmundmiller
    edmundmiller committed Jul 17, 2024
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  4. Try accessing secrets in the module?

    @edmundmiller
    edmundmiller committed Jul 17, 2024
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  5. fix: Use Nextflow for if statement

    @edmundmiller
    edmundmiller committed Jul 17, 2024
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  6. update snapshot

    @maxulysse @edmundmiller
    maxulysse authored and edmundmiller committed Jul 17, 2024
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  7. update snapshot

    @maxulysse @edmundmiller
    maxulysse authored and edmundmiller committed Jul 17, 2024
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  8. extend logic to all main.nf

    @maxulysse @edmundmiller
    maxulysse authored and edmundmiller committed Jul 17, 2024
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  9. ci: Add Sentieon logic to pytest-workflow

    @edmundmiller
    edmundmiller committed Jul 17, 2024
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  10. test(sentieon): Add env section to every config

    @edmundmiller
    edmundmiller committed Jul 17, 2024
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Commits on Jul 19, 2024

  1. Revert "ci: Add Sentieon logic to pytest-workflow" 

    This reverts commit 76884d2.
    @edmundmiller
    edmundmiller committed Jul 19, 2024
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  2. test: Remove pytest_modules for sentieon

    @edmundmiller
    edmundmiller committed Jul 19, 2024
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