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nf-core · Dec 11, 2024 · 904dbe5 · 904dbe5
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commit 904dbe5
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diff --git a/modules/nf-core/busco/busco/main.nf b/modules/nf-core/busco/busco/main.nf
@@ -10,7 +10,7 @@ process BUSCO_BUSCO {
     input:
     tuple val(meta), path(fasta, stageAs:'tmp_input/*')
     val mode                              // Required:    One of genome, proteins, or transcriptome
-    val lineage                           // Required:    lineage to check against, "auto" enables --auto-lineage instead
+    val lineage                           // Required:    lineage to check against, or "auto/auto_prok/auto_euk" to enable auto-lineage 
     path busco_lineages_path              // Recommended: path to busco lineages - downloads if not set
     path config_file                      // Optional:    busco configuration file
 

diff --git a/modules/nf-core/busco/busco/meta.yml b/modules/nf-core/busco/busco/meta.yml
@@ -32,7 +32,7 @@ input:
         pattern: "{genome,proteins,transcriptome}"
   - - lineage:
         type: string
-        description: The BUSCO lineage to use, or "auto" to automatically select lineage
+        description: The BUSCO lineage to use, or "auto", "auto_prok" or "auto_euk" to automatically select lineage
   - - busco_lineages_path:
         type: directory
         description: Path to local BUSCO lineages directory.