Code

Refactor for release 2.6#310

Code

Merged

jonasscheid merged 20 commits intonf-core:devnf-core/mhcquant:devfrom jonasscheid:refactor-for-release-2_6jonasscheid/mhcquant:refactor-for-release-2_6Copy head branch name to clipboardFeb 27, 2024

+1,606-682

Commits

Commits on Jan 5, 2024

• temporarily disable neoepitopeprediction due to outdated vcf parsing

  jonasscheid

  committed
  ffbb623

• remove not needed ifEmpty(null) from versions channel

  jonasscheid

  committed
  4dca345

• use nf-core decoydatabase, remove local

  jonasscheid

  committed
  3c8ff6b

• remove not used fdr module

  jonasscheid

  committed
  85c61ce

• use nf-core peakpickerhires, remove local

  jonasscheid

  committed
  f0629fe

• add nfcore idmerger module, remove local

  jonasscheid

  committed
  ccca493

• update module patj

  jonasscheid

  committed
  460c8c0

• Use nf-core idfilter module, remove local

  jonasscheid

  committed
  2136617

Commits on Jan 6, 2024

• delete custom idfilter script

  jonasscheid

  committed
  3af6c1b

• delete pyopenms idfilter module

  jonasscheid

  committed
  d4972ca

Commits on Jan 8, 2024

• replace pyopenms idfilter with nf-core openms module

  jonasscheid

  committed
  27c696f

Commits on Jan 9, 2024

• add idscoreswitcher nf-core module

  jonasscheid

  committed
  8f1a411

Commits on Jan 12, 2024

• add nf-core module idripper, remove local

  jonasscheid

  committed
  e37e9d6

• introduce spectra meta key for easier merge and splitting, adjust quant subworkflow accordingly

  jonasscheid

  committed
  2719b61

Commits on Feb 23, 2024

• replace local with nf-core modules and adjust downstream channel handling

  jonasscheid

  committed
  7138ff9

• switch thermorawfileparser from local to nf-core module

  jonasscheid

  committed
  49a5bb6

• move thermorawfileparser config to nf-core section

  jonasscheid

  committed
  5e54eb6

Commits on Feb 24, 2024

• remove channel view

  Show description for 200865a
  

  jonasscheid

  and

  FriederikeHanssen

  authored
  200865a

Commits on Feb 26, 2024

• update changelog and readme

  jonasscheid

  committed
  e52085d

• Merge branch 'dev' into refactor-for-release-2_6

  jonasscheid

  authored
  e7a1938