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remove unused output folder #298

Merged
merged 2 commits into from
Feb 16, 2023
Merged

remove unused output folder #298

merged 2 commits into from
Feb 16, 2023

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njspix
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@njspix njspix commented Feb 14, 2023

Apparently the ./results/bismark/methylation_calls/stranded_CpG_report/ directory is no longer used. The files previously produced by BISMARK_METHYLATIONEXTRACTOR are now produced by COVERAGE2CYTOSINE and can be found in /results/bismark/coverage2cytosine/reports.

@njspix njspix linked an issue Feb 14, 2023 that may be closed by this pull request
@njspix njspix changed the base branch from master to dev February 14, 2023 19:20
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@edmundmiller edmundmiller left a comment

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Looks good to me! I think nf-core is failing because of #293

@nf-core nf-core deleted a comment from github-actions bot Feb 14, 2023
@edmundmiller edmundmiller added this to the 2.4 milestone Feb 14, 2023
@njspix njspix enabled auto-merge February 14, 2023 22:14
@ewels ewels disabled auto-merge February 16, 2023 13:11
@ewels ewels merged commit 929b308 into dev Feb 16, 2023
@ewels ewels deleted the issue_297 branch February 16, 2023 13:11
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stranded_CpG_report folder is empty
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