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Fix: container updates docker manifest issues #632

Merged
merged 5 commits into from
Jun 27, 2024
Merged

Fix: container updates docker manifest issues #632

merged 5 commits into from
Jun 27, 2024

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jfy133
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@jfy133 jfy133 commented Jun 27, 2024

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/mag branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Jun 27, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 42db409

+| ✅ 307 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Remove this line if you don't need a FASTA file [TODO: try and test using for --host_fasta and --host_genome]
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-06-27 15:16:26

prototaxites
prototaxites approved these changes Jun 27, 2024
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LGTM! 👍 (assuming you caught all the containers!)

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jfy133 commented Jun 27, 2024

LGTM! 👍 (assuming you caught all the containers!)

I can only detect they fail here, so hopefully 😅🙈

@jfy133 jfy133 merged commit f52cbd3 into dev Jun 27, 2024
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@jfy133 jfy133 deleted the general-container-updates-docker-manifest branch August 15, 2024 19:31
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@prototaxites prototaxites prototaxites approved these changes

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