You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
at the moment BUSCO's no gene warning is reported in the STDOUT log where pipeline errors are normally highlighted, but given that it is expected that this might happen in some cases it might be better to remove the warning. Currently the warning is displayed like this (lines 3-7) at the end of the run:
[c6/eb468a] process > NFCORE_MAG:mag:CUSTOM_DUMPS... [100%] 1 of 1 ✔
[c3/8aa445] process > NFCORE_MAG:mag:MULTIQC [100%] 1 of 1 ✔
-[nf-core/mag] For 2 bin(s) BUSCO did not find any matching genes:
SPAdes-MaxBin2-test_minigut_sample2.noclass.2.fa
SPAdes-MaxBin2-test_minigut_sample2.noclass.1.fa
See /home/lmarcell/out/GenomeBinning/QC/BUSCO/[bin]_busco.log for further information.-
-[nf-core/mag] Pipeline completed successfully, but with errored process(es) -
Completed at: 03-Mar-2023 11:34:55
Duration : 34m 39s
CPU hours : 1.0 (0.1% failed)
Succeeded : 150
Ignored : 1
Failed : 1
Many thanks!
Lucio
The text was updated successfully, but these errors were encountered:
Description of feature
at the moment BUSCO's no gene warning is reported in the STDOUT log where pipeline errors are normally highlighted, but given that it is expected that this might happen in some cases it might be better to remove the warning. Currently the warning is displayed like this (lines 3-7) at the end of the run:
Many thanks!
Lucio
The text was updated successfully, but these errors were encountered: