Merge pull request #72 from skrakau/busco_error_handling

Busco error handling - do not ignore
nf-core · Jul 14, 2020 · fbbf302 · fbbf302
2 parents 467b39f + 9ec9121
commit fbbf302
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -28,6 +28,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 - Fix number of threads used by MetaBAT2 program `jgi_summarize_bam_contig_depths`
 - Fix SPAdes memory conversion issue [#70](https://github.com/nf-core/mag/pull/70)
 - No more ignoring errors in SPAdes assembly
+- No more ignoring of BUSCO errors
 
 ### `Deprecated`
 

diff --git a/conf/base.config b/conf/base.config
@@ -24,7 +24,7 @@ process {
     time = 4.h
   }
   withName: busco {
-    errorStrategy = { task.exitStatus in [143,137] ? 'retry' : 'ignore' }
+    errorStrategy = { task.exitStatus in [143,137] ? 'retry' : 'finish' }
   }
   withName: phix_download_db {
     time = 4.h