Format include statements

nf-core · Nov 25, 2024 · f2507b2 · f2507b2
1 parent 16ba808
commit f2507b2
Showing 1 changed file with 12 additions and 12 deletions.
diff --git a/subworkflows/local/shortread_preprocessing.nf b/subworkflows/local/shortread_preprocessing.nf
@@ -2,18 +2,18 @@
  * SHORTREAD_PREPROCESSING: Preprocessing and QC for short reads
  */
 
-include { FASTQC as FASTQC_RAW                                  } from '../../modules/nf-core/fastqc/main'
-include { FASTQC as FASTQC_TRIMMED                              } from '../../modules/nf-core/fastqc/main'
-include { FASTP                                                } from '../../modules/nf-core/fastp/main'
-include { ADAPTERREMOVAL as ADAPTERREMOVAL_PE                   } from '../../modules/nf-core/adapterremoval/main'
-include { ADAPTERREMOVAL as ADAPTERREMOVAL_SE                   } from '../../modules/nf-core/adapterremoval/main'
-include { BOWTIE2_REMOVAL_BUILD as BOWTIE2_HOST_REMOVAL_BUILD   } from '../../modules/local/bowtie2_removal_build'
-include { BOWTIE2_REMOVAL_ALIGN as BOWTIE2_HOST_REMOVAL_ALIGN   } from '../../modules/local/bowtie2_removal_align'
-include { BOWTIE2_REMOVAL_BUILD as BOWTIE2_PHIX_REMOVAL_BUILD   } from '../../modules/local/bowtie2_removal_build'
-include { BOWTIE2_REMOVAL_ALIGN as BOWTIE2_PHIX_REMOVAL_ALIGN   } from '../../modules/local/bowtie2_removal_align'
-include { CAT_FASTQ                                            } from '../../modules/nf-core/cat/fastq/main'
-include { SEQTK_MERGEPE                                        } from '../../modules/nf-core/seqtk/mergepe/main'
-include { BBMAP_BBNORM                                         } from '../..//modules/nf-core/bbmap/bbnorm/main'
+include { FASTQC as FASTQC_RAW                                } from '../../modules/nf-core/fastqc/main'
+include { FASTQC as FASTQC_TRIMMED                            } from '../../modules/nf-core/fastqc/main'
+include { FASTP                                               } from '../../modules/nf-core/fastp/main'
+include { ADAPTERREMOVAL as ADAPTERREMOVAL_PE                 } from '../../modules/nf-core/adapterremoval/main'
+include { ADAPTERREMOVAL as ADAPTERREMOVAL_SE                 } from '../../modules/nf-core/adapterremoval/main'
+include { BOWTIE2_REMOVAL_BUILD as BOWTIE2_HOST_REMOVAL_BUILD } from '../../modules/local/bowtie2_removal_build'
+include { BOWTIE2_REMOVAL_ALIGN as BOWTIE2_HOST_REMOVAL_ALIGN } from '../../modules/local/bowtie2_removal_align'
+include { BOWTIE2_REMOVAL_BUILD as BOWTIE2_PHIX_REMOVAL_BUILD } from '../../modules/local/bowtie2_removal_build'
+include { BOWTIE2_REMOVAL_ALIGN as BOWTIE2_PHIX_REMOVAL_ALIGN } from '../../modules/local/bowtie2_removal_align'
+include { CAT_FASTQ                                           } from '../../modules/nf-core/cat/fastq/main'
+include { SEQTK_MERGEPE                                       } from '../../modules/nf-core/seqtk/mergepe/main'
+include { BBMAP_BBNORM                                        } from '../../modules/nf-core/bbmap/bbnorm/main'
 
 workflow SHORTREAD_PREPROCESSING {
     take: