fix custom samtools view module

nf-core · Nov 29, 2024 · ca4d101 · ca4d101
1 parent 67d44d0
commit ca4d101
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/modules/local/samtools/fastq_longread/main.nf b/modules/local/samtools/fastq_longread/main.nf
@@ -28,8 +28,8 @@ process SAMTOOLS_LONGREAD_FASTQ {
         $args \\
         --threads ${task.cpus-1} \\
         -0 ${prefix}_other.fastq.gz \\
-        $input \\
-        $output
+        $output \\
+        $input
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":