Merge pull request #76 from skrakau/fix_link

Fix and update links to CAT database in docs
nf-core · Jul 15, 2020 · a57d2f4 · a57d2f4
2 parents b377a82 + 9bd2b59
commit a57d2f4
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diff --git a/docs/usage.md b/docs/usage.md
@@ -237,7 +237,7 @@ Database for taxonomic binning with kraken2 (default: none). E.g. "<ftp://ftp.cc
 
 ### `--cat_db`
 
-Database for taxonomic classification of metagenome assembled genomes (default: none). E.g. "<tbb.bio.uu.nl/bastiaan/CAT*prepare/CAT_prepare_20190108.tar.gz>"
+Database for taxonomic classification of metagenome assembled genomes (default: none). E.g. "<http://tbb.bio.uu.nl/bastiaan/CAT_prepare/CAT_prepare_20200618.tar.gz>"
 The zipped file needs to contain a folder named "\_taxonomy*" and "_CAT_database_" that hold the respective files.
 
 ## Assembly options

diff --git a/main.nf b/main.nf
@@ -72,7 +72,7 @@ def helpMessage() {
       --centrifuge_db [file]                Database for taxonomic binning with centrifuge (default: none). E.g. "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed+h+v.tar.gz"
       --kraken2_db [file]                   Database for taxonomic binning with kraken2 (default: none). E.g. "ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/minikraken_8GB_202003.tgz"
       --skip_krona [bool]                   Skip creating a krona plot for taxonomic binning
-      --cat_db [file]                       Database for taxonomic classification of metagenome assembled genomes (default: none). E.g. "tbb.bio.uu.nl/bastiaan/CAT_prepare/CAT_prepare_20190108.tar.gz"
+      --cat_db [file]                       Database for taxonomic classification of metagenome assembled genomes (default: none). E.g. "http://tbb.bio.uu.nl/bastiaan/CAT_prepare/CAT_prepare_20200618.tar.gz"
                                             The zipped file needs to contain a folder named "*taxonomy*" and "*CAT_database*" that hold the respective files.
 
     Binning options: