gtdbtk: add check when params.busco_db is not defined

nf-core · Nov 28, 2024 · 4ecd36f · 4ecd36f
1 parent 49ebb71
commit 4ecd36f
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/subworkflows/local/gtdbtk.nf b/subworkflows/local/gtdbtk.nf
@@ -24,8 +24,7 @@ workflow GTDBTK {
                         def completeness  = -1
                         def contamination = -1
                         def missing, duplicated
-                        def busco_db = file(params.busco_db)
-                        if (busco_db.getBaseName().contains('odb10')) {
+                        if (params.busco_db && file(params.busco_db).getBaseName().contains('odb10')) {
                             missing    = row.'%Missing (specific)'      // TODO or just take '%Complete'?
                             duplicated = row.'%Complete and duplicated (specific)'
                         } else {