Merge pull request #514 from nf-core/fix-missing-concoct-globs

Fix missing concoct globs
nf-core · Sep 27, 2023 · 3cd0541 · 3cd0541
2 parents 62b2d1c + 3943efa
commit 3cd0541
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -13,6 +13,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Fixed`
 
+- [#514](https://github.com/nf-core/mag/pull/514) Fix missing CONCOCT files in downstream output (reported by @maxibor, fix by @jfy133)
+
 ### `Dependencies`
 
 ## 2.4.0 - 2023-09-26

diff --git a/conf/modules.config b/conf/modules.config
@@ -660,6 +660,10 @@ process {
         ext.prefix = { "${meta.assembler}-MaxBin2-${meta.id}" }
     }
 
+    withName: DASTOOL_FASTATOCONTIG2BIN_CONCOCT {
+        ext.prefix = { "${meta.assembler}-CONCOCT-${meta.id}" }
+    }
+
     withName: DASTOOL_FASTATOCONTIG2BIN_TIARA {
         ext.prefix = { "${meta.assembler}-${meta.binner}-${meta.id}" }
     }
@@ -687,7 +691,7 @@ process {
                 path: { "${params.outdir}/GenomeBinning/DASTool/bins" },
                 mode: params.publish_dir_mode,
                 // pattern needs to be updated in case of new binning methods
-                pattern: '*-{MetaBAT2,MaxBin2}Refined-*.fa'
+                pattern: '*-{MetaBAT2,MaxBin2,CONCOCT}Refined-*.fa'
             ]
         ]
     }