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Merge pull request #344 from alexhbnr/fix_doc_genome
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Update genome commandline parameter
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alexhbnr authored Oct 20, 2022
2 parents 00cccfe + 4b70648 commit 2e05bd0
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2 changes: 1 addition & 1 deletion docs/usage.md
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Expand Up @@ -71,7 +71,7 @@ Again, by default, the group information is only used to compute co-abundances f
The typical command for running the pipeline is as follows:

```bash
nextflow run nf-core/mag --input samplesheet.csv --outdir <OUTDIR> --genome GRCh37 -profile docker
nextflow run nf-core/mag --input samplesheet.csv --outdir <OUTDIR> --host_genome GRCh37 -profile docker
```

This will launch the pipeline with the `docker` configuration profile. See below for more information about profiles.
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