Fix input to single-end MEGAHIT runs

nf-core · Dec 10, 2024 · 1ef93a0 · 1ef93a0
1 parent a9c213f
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Showing 3 changed files with 3 additions and 2 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -17,6 +17,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - [#716](https://github.com/nf-core/mag/pull/692) - Make short read processing a subworkflow (added by @muabnezor)
 - [#708](https://github.com/nf-core/mag/pull/708) - Fixed channel passed as GUNC input (added by @dialvarezs)
+- [#727](https://github.com/nf-core/mag/pull/727) - Fixed misspecified multi-FASTQ input for single-end data in MEGAHIT (reported by John Richards, fix by @jfy133)
 
 ### `Dependencies`
 

diff --git a/modules.json b/modules.json
@@ -179,7 +179,7 @@
                     },
                     "megahit": {
                         "branch": "master",
-                        "git_sha": "7755db15e36b30da564cd67fffdfe18a255092aa",
+                        "git_sha": "9142b390538283705c084e4d612170972ff60326",
                         "installed_by": ["modules"]
                     },
                     "metabat2/jgisummarizebamcontigdepths": {

diff --git a/modules/nf-core/megahit/main.nf b/modules/nf-core/megahit/main.nf