Fix #173

nf-core · Oct 6, 2023 · a9e5646 · a9e5646
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -12,15 +12,29 @@ Special thanks to the following for their contributions to the release:
 - [Adam Talbot](https://github.com/adamrtalbot)
 - [Harshil Patel](https://github.com/drpatelh)
 - [Maxime Garcia](https://github.com/maxulysse)
+- [Rob Syme](https://github.com/robsyme)
 
 Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.
 
 ### Enhancements & fixes
 
+- [#173](https://github.com/nf-core/fetchngs/issues/173) - Add compatibility for sralite files
 - [PR #205](https://github.com/nf-core/fetchngs/pull/205) - Rename all local modules, workflows and remove `public_aws_ecr profile`
 - [PR #206](https://github.com/nf-core/fetchngs/pull/206) - CI improvments and code cleanup
 - [PR #208](https://github.com/nf-core/fetchngs/pull/208) - Template update with nf-core/tools 2.10
 
+### Software dependencies
+
+| Dependency      | Old version | New version |
+| --------------- | ----------- | ----------- |
+| `sra-tools`     | 2.11.0      | 3.0.8       |
+
+> **NB:** Dependency has been **updated** if both old and new version information is present.
+>
+> **NB:** Dependency has been **added** if just the new version information is present.
+>
+> **NB:** Dependency has been **removed** if new version information isn't present.
+
 ## [[1.10.0](https://github.com/nf-core/fetchngs/releases/tag/1.10.0)] - 2023-05-16
 
 ### Credits

diff --git a/modules.json b/modules.json
@@ -17,12 +17,12 @@
                     },
                     "sratools/fasterqdump": {
                         "branch": "master",
-                        "git_sha": "6712754854ae2832abfff3f0800cdb4a6a60bfca",
+                        "git_sha": "4d9951c6c9c4c19ea944bb73149caf9d3cb1f2fc",
                         "installed_by": ["fastq_download_prefetch_fasterqdump_sratools"]
                     },
                     "sratools/prefetch": {
                         "branch": "master",
-                        "git_sha": "6712754854ae2832abfff3f0800cdb4a6a60bfca",
+                        "git_sha": "4d9951c6c9c4c19ea944bb73149caf9d3cb1f2fc",
                         "installed_by": ["fastq_download_prefetch_fasterqdump_sratools"]
                     }
                 }
@@ -31,7 +31,7 @@
                 "nf-core": {
                     "fastq_download_prefetch_fasterqdump_sratools": {
                         "branch": "master",
-                        "git_sha": "6712754854ae2832abfff3f0800cdb4a6a60bfca",
+                        "git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
                         "installed_by": ["subworkflows"]
                     }
                 }

diff --git a/modules/nf-core/sratools/fasterqdump/main.nf b/modules/nf-core/sratools/fasterqdump/main.nf
diff --git a/modules/nf-core/sratools/prefetch/main.nf b/modules/nf-core/sratools/prefetch/main.nf
diff --git a/modules/nf-core/sratools/prefetch/templates/retry_with_backoff.sh b/modules/nf-core/sratools/prefetch/templates/retry_with_backoff.sh
diff --git a/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/meta.yml b/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/meta.yml