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uncomment required line for linting in --release mode #182

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merged 2 commits into from
Nov 6, 2024
Merged

uncomment required line for linting in --release mode #182

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262f741
uncomment required line for linting in --release mode
Daniel-VM Nov 5, 2024
e241ff8
update changelog in #182
Daniel-VM Nov 5, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -21,6 +21,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Fixed`

- [#182](https://github.com/nf-core/bacass/pull/182) Uncommented required line to pass linting test in `--release` mode.
- [#179](https://github.com/nf-core/bacass/pull/179) Fixed matrix.test_name in linting and missing features from template 3.0.2.
- [#178](https://github.com/nf-core/bacass/pull/178) Fixed bakta running only for one sample.
- [#169](https://github.com/nf-core/bacass/pull/169) Fixed long reads polishing input channel.
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -204,7 +204,7 @@ includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${pa

// Load nf-core/bacass custom profiles from different institutions.
// TODO nf-core: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs
// includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/bacass.config" : "/dev/null"
includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/bacass.config" : "/dev/null"

// Set default registry for Apptainer, Docker, Podman, Charliecloud and Singularity independent of -profile
// Will not be used unless Apptainer / Docker / Podman / Charliecloud / Singularity are enabled
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