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Sample sheet validation could be performed via nf-validation plugin.
In addition, tsv/csv documentation and parsing will need adjustments.
Fix README: tsv file extension on sample sheet will fail, change it to csv - [ ] Update test data-set (nf-core/test-dataset::bacass ). Two options:
- Switch from tab to comma separated content/structure on sample sheets for testing (I prefer this one) .
- Or Change file extensions on sample sheets from csv to tsv
Add nf-validation on sample sheet
The text was updated successfully, but these errors were encountered:
Validation fails on the sample sheet when attempting to read a tab-separated file with a *.csv extension.
This issue affects all test datasets within nf-core/test-dataset::bacass. It might be advisable to consider changing the file extension from csv to tsv for the test dataset files.
We could just add the same files with a tsv ending. I think its better to leave the old files in to keep older bacass versions with -profile test running. Do you want to do it or should I?
Sample sheet validation could be performed via nf-validation plugin.
In addition, tsv/csv documentation and parsing will need adjustments.
- [ ] Update test data-set (nf-core/test-dataset::bacass
). Two options:- Switch from tab to comma separated content/structure on sample sheets for testing (I prefer this one) .
- Or Change file extensions on sample sheets from csv to tsv
The text was updated successfully, but these errors were encountered: