Fix errors from language server

Signed-off-by: Ben Sherman <[email protected]>
nextflow-io · Nov 4, 2024 · 96aa997 · 96aa997
1 parent 1c3027e
commit 96aa997
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Showing 2 changed files with 9 additions and 9 deletions.
diff --git a/main.nf b/main.nf
@@ -15,14 +15,6 @@ params.transcriptome = "$baseDir/data/ggal/ggal_1_48850000_49020000.Ggal71.500bp
 params.outdir = "results"
 params.multiqc = "$baseDir/multiqc"
 
-log.info """\
- R N A S E Q - N F   P I P E L I N E
- ===================================
- transcriptome: ${params.transcriptome}
- reads        : ${params.reads}
- outdir       : ${params.outdir}
- """
-
 // import modules
 include { RNASEQ } from './modules/rnaseq'
 include { MULTIQC } from './modules/multiqc'
@@ -31,6 +23,14 @@ include { MULTIQC } from './modules/multiqc'
  * main script flow
  */
 workflow {
+  log.info """\
+    R N A S E Q - N F   P I P E L I N E
+    ===================================
+    transcriptome: ${params.transcriptome}
+    reads        : ${params.reads}
+    outdir       : ${params.outdir}
+    """.stripIndent()
+
   read_pairs_ch = channel.fromFilePairs( params.reads, checkIfExists: true ) 
   RNASEQ( params.transcriptome, read_pairs_ch )
   MULTIQC( RNASEQ.out, params.multiqc )

diff --git a/modules/multiqc/main.nf b/modules/multiqc/main.nf
@@ -13,7 +13,7 @@ process MULTIQC {
 
     script:
     """
-    cp $config/* .
+    cp config/* .
     echo "custom_logo: \$PWD/logo.png" >> multiqc_config.yaml
     multiqc -o multiqc_report.html .
     """