Conda config: Remove defaults (#29) #92
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: rnaseq-nf | |
| # This workflow is triggered on pushes to the repository. | |
| on: [push] | |
| jobs: | |
| build: | |
| name: rnseq-nf ci | |
| # This job runs on Linux | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| java_version: ['11.0.4'] | |
| steps: | |
| - name: Environment | |
| run: env | sort | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| with: | |
| fetch-depth: 1 | |
| submodules: true | |
| - name: Setup Java | |
| uses: actions/setup-java@v1 | |
| with: | |
| java-version: ${{ matrix.java_version }} | |
| architecture: x64 | |
| - name: Tests | |
| run: | | |
| curl -fsSL get.nextflow.io | bash | |
| ./nextflow run . -profile docker | |
| env: | |
| NXF_ANSI_LOG: false | |
| - name: Tests Wave | |
| run: | | |
| curl -fsSL get.nextflow.io | bash | |
| ./nextflow run . -profile docker,wave | |
| env: | |
| NXF_ANSI_LOG: false |