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Fix and relax bboxes requirements#313

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sfmig merged 33 commits intomainneuroinformatics-unit/movement:mainfrom smg/fix-and-relax-reqs-bboxesneuroinformatics-unit/movement:smg/fix-and-relax-reqs-bboxesCopy head branch name to clipboardDec 5, 2024

+623-242

Commits

Commits on Dec 4, 2024

• Fix for single individual

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  cd255db

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• Relax requirement of continuous frames for bboxes dataset (require only monotonically increasing frame numbers)

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• Relax requirement for frame number

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• Make existing tests pass

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• test_from_via_tracks_file and test_via_attribute_column_to_numpy pass (WIP)

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• Clarify docstring

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• Fix and simplify existing tests

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Fix and simplify existing tests

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Fix sonarcloud issue

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• Add test for case in which frame is defined under file_attribute

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• Simplify frame number extraction test by splitting it

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• Use default regexp global variable

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• Add docstrings to fixtures

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• Make fixtures for new frame check more evident

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• Fix from numpy docstring

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• Fix docstring in validator re regexp for frame number

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• Add value error to assert_time_coordinates

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• Remove note to self

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• Expose frame regexp

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• Add try except pattern for regexp match

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• Extend and add tests for frame_regexp possible values

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• Clarify error message for validator about frame regexp

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• Simplify try except regexp block

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• Fix tests

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• Simplify

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• Adapt tests

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• Simplify frame extraction

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• Small edits

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Commits on Dec 5, 2024

• Clarify docstrings

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  8b6551b

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• Specify exception caught when extracting frame number from file_attribute

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  8fbc251

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• Fix error message referring to default regexp only, and adapt tests

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