Add combined node and edge counts to dashboard

docs/_config.yml

@@ -53,6 +53,8 @@ plugins:
 
 # Ontology status table goes under here.
 totalcount: 1050
+totalnodecount: 10509205
+totaledgecount: 20055264
 ontologies:
 - edgecount: 555
   id: REGN_BRO

docs/index.html

@@ -15,6 +15,8 @@ <h3>Learn more about KG-Bioportal</h3>
       <h3>KG-Bioportal Overview</h3>
       <p>The collection includes graph files for {{ site.totalcount }} ontologies. </p>
 
+      <p>In all, this includes {{site.totalnodecount }} ontology classes as nodes and {{site.totaledgecount}} relations between classes as edges.</p>
+
       {% include fig1.html %}
       {% include fig2.html %}
       <br>

src/kg_bioportal/transformer.py

@@ -119,12 +119,23 @@ def transform_all(self, compress: bool) -> None:
         # Write total stats to a yaml
         logging.info("Writing total stats to total_stats.yaml.")
         # Get the count of successful transforms
+        # Plus total node and edge counts
         success_count = 0
         for onto in onto_log:
             if onto_log[onto]["status"]:
                 success_count += 1
         with open(os.path.join(self.output_dir, "total_stats.yaml"), "w") as f:
             f.write("totalcount: " + str(success_count) + "\n")
+            f.write(
+                "totalnodecount: "
+                + str(sum([onto_log[onto]["nodecount"] for onto in onto_log]))
+                + "\n"
+            )
+            f.write(
+                "totaledgecount: "
+                + str(sum([onto_log[onto]["edgecount"] for onto in onto_log]))
+                + "\n"
+            )
 
         # Dump onto_log to a yaml
         # Rearrange it a bit first