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Set Jenkinsfile to use pre-built ontology list
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caufieldjh committed Sep 5, 2024
1 parent 9e3431e commit fe6a61d
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion Jenkinsfile
Original file line number Diff line number Diff line change
Expand Up @@ -75,7 +75,9 @@ pipeline {
script {
// Get the names of all BioPortal ontologies
// This saves the list to data/raw/ontologylist.tsv
sh ". venv/bin/activate && kgbioportal -vvv get-ontology-list --api_key ${NCBO_API_KEY}"
//sh ". venv/bin/activate && kgbioportal -vvv get-ontology-list --api_key ${NCBO_API_KEY}"

// For now, we use the pre-built list included with the repo.

// Download the ontologies
// This saves them to data/raw/
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