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Fix issues in array equality tests and documentation-building #45

Merged
merged 2 commits into from
Jan 9, 2023
Merged

Fix issues in array equality tests and documentation-building #45

merged 2 commits into from
Jan 9, 2023

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nathan-hess
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@nathan-hess nathan-hess commented Jan 9, 2023 •
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Bug Fixes

  • Fixed an issue that caused array equality tests to fail with the latest version of NumPy. Previous versions of NumPy allowed "inhomogenous" arrays, but the latest versions throw a ValueError, causing the tests to fail
  • Added version requirement for sphinx-book-theme in docs/requirements.txt
    • Without this specified version, pip would get into a "loop" and install progressively older versions of pydata-sphinx-theme and sphinx-book-theme, eventually leading to incompatible, outdated package versions (see log excerpt below)
GitHub Actions log excerpt 

2023-01-09T02:55:34.5685407Z ##[group]Run python3 -m pip install --upgrade pip
2023-01-09T02:55:34.5685723Z �[36;1mpython3 -m pip install --upgrade pip�[0m
2023-01-09T02:55:34.5685977Z �[36;1mpython3 -m pip install wheel�[0m
2023-01-09T02:55:34.5686273Z �[36;1mpython3 -m pip install -r "${GITHUB_WORKSPACE}/docs/requirements.txt"�[0m
2023-01-09T02:55:34.5741485Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0}
2023-01-09T02:55:34.5741722Z env:
2023-01-09T02:55:34.5741912Z   PACKAGE_NAME: pyxx
2023-01-09T02:55:34.5742127Z   PYTHON_RELEASE_VERSION: 3.8
2023-01-09T02:55:34.5742419Z   WORKFLOW_MATRIX_CONFIG: "{\"python-version\": [\"3.8\", \"3.9\", \"3.10\"]}"
2023-01-09T02:55:34.5742754Z   pythonLocation: /opt/hostedtoolcache/Python/3.8.15/x64
2023-01-09T02:55:34.5743080Z   PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.8.15/x64/lib/pkgconfig
2023-01-09T02:55:34.5743392Z   Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.8.15/x64
2023-01-09T02:55:34.5743694Z   Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.8.15/x64
2023-01-09T02:55:34.5743981Z   Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.8.15/x64
2023-01-09T02:55:34.5744278Z   LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.8.15/x64/lib
2023-01-09T02:55:34.5744512Z ##[endgroup]
2023-01-09T02:55:35.2974052Z Requirement already satisfied: pip in /opt/hostedtoolcache/Python/3.8.15/x64/lib/python3.8/site-packages (22.3.1)
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2023-01-09T02:55:36.5780021Z Successfully installed wheel-0.38.4
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2023-01-09T02:55:44.8728002Z   Downloading soupsieve-2.3.2.post1-py3-none-any.whl (37 kB)
2023-01-09T02:55:45.3545068Z Installing collected packages: snowballstemmer, pytz, mpmath, alabaster, zipp, urllib3, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, six, pyyaml, pyparsing, Pygments, PyEnchant, pillow, packaging, numpy, MarkupSafe, kiwisolver, imagesize, idna, fonttools, docutils, cycler, click, charset-normalizer, certifi, babel, requests, python-dateutil, Jinja2, importlib-metadata, contourpy, beautifulsoup4, Sphinx, matplotlib, sphinxcontrib-spelling, sphinx-remove-toctrees, sphinx_design, sphinx-copybutton, pydata-sphinx-theme, sphinx-book-theme
2023-01-09T02:56:00.9746070Z Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.1 PyEnchant-3.2.2 Pygments-2.14.0 Sphinx-5.3.0 alabaster-0.7.12 babel-2.11.0 beautifulsoup4-4.11.1 certifi-2022.12.7 charset-normalizer-2.1.1 click-8.1.3 contourpy-1.0.6 cycler-0.11.0 docutils-0.19 fonttools-4.38.0 idna-3.4 imagesize-1.4.1 importlib-metadata-6.0.0 kiwisolver-1.4.4 matplotlib-3.6.2 mpmath-1.2.1 numpy-1.24.1 packaging-23.0 pillow-9.4.0 pydata-sphinx-theme-0.4.3 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7 pyyaml-6.0 requests-2.28.1 six-1.16.0 snowballstemmer-2.2.0 soupsieve-2.3.2.post1 sphinx-book-theme-0.0.39 sphinx-copybutton-0.5.1 sphinx-remove-toctrees-0.0.3 sphinx_design-0.3.0 sphinxcontrib-applehelp-1.0.3 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-spelling-7.7.0 sympy-1.11.1 urllib3-1.26.13 zipp-3.11.0

Notes and References

@nathan-hess
Fix issue in array equality tests
ca2fdd9 
Fixed an issue that caused array equality tests to fail with the latest version of NumPy. Previous versions of NumPy allowed "inhomogenous" arrays, but the latest versions throw a `ValueError`, causing the tests to fail
@nathan-hess nathan-hess added bug Something isn't working testing Additions or updates to automated unit and regression tests labels Jan 9, 2023
@nathan-hess nathan-hess self-assigned this Jan 9, 2023
@nathan-hess nathan-hess changed the title Fix issue in array equality tests Fix issues in array equality tests and documentation-building Jan 9, 2023
@nathan-hess nathan-hess added documentation Improvements or additions to documentation dependencies Pull requests that update a dependency file labels Jan 9, 2023
@nathan-hess nathan-hess merged commit 4b325d3 into main Jan 9, 2023
@nathan-hess nathan-hess deleted the fix-test-error branch January 9, 2023 03:11
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