Merge pull request #5 from natalie-perlin/update_gaea_c5

correct devclean.sh, devbuild.sh and Gaea-c5 modulefiles

devbuild.sh

@@ -212,6 +212,11 @@ printf "PLATFORM(MACHINE)=${PLATFORM}\n" >&2
 if [ "${PLATFORM}" = "wcoss2" ]; then
     BUILD_CONDA="off"
 fi
+# Conda is not used on Gaea-c5 F2 filesystem 
+# it needs to be reevaluated when moved to F2 filesystem
+if [ "${PLATFORM}" = "gaea-c5" ]; then
+    BUILD_CONDA="off"
+fi
 
 # build conda and conda environments, if requested.
 if [ "${BUILD_CONDA}" = "on" ] ; then
@@ -244,8 +249,10 @@ if [ "${BUILD_CONDA}" = "on" ] ; then
   fi
 
 else
-  source ${CONDA_BUILD_DIR}/etc/profile.d/conda.sh
-  conda activate
+  if [ -d "${CONDA_BUILD_DIR}" ] ; then
+    source ${CONDA_BUILD_DIR}/etc/profile.d/conda.sh
+    conda activate
+  fi
 fi
 
 # Conda environment should have linux utilities to perform these tasks on macos.

devclean.sh

@@ -137,10 +137,12 @@ elif [ "${CLEAN}" = true ]; then
     "${INSTALL_DIR}/lib64" \
     "${SRW_DIR}/manage_externals/manic" \
   )
-  for directory in $directories; do
-    [[ -d $directory ]] && rm -rfv $directory
-  done
+  if [ ${#directories[@]} -ge 1 ]; then
+    for dir in ${directories[@]}; do 
+     [[ -d "${dir}" ]] &&  rm -rfv ${dir} 
+    done
   echo " "
+  fi
 fi
 # Clean all the submodules if requested. Note: Need to check out them again before attempting subsequent builds, by sourcing ${SRW_DIR}/manage_externals/checkout_externals
 if [ ${INCLUDE_SUB_MODULES} == true ]; then

modulefiles/tasks/gaea-c5/plot_allvars.local.lua

@@ -1,2 +1,6 @@
-load("conda")
-setenv("SRW_ENV", "srw_graphics")
+unload("miniconda3")
+unload("python")
+prepend_path("MODULEPATH","/lustre/f2/dev/role.epic/contrib/C5/miniconda3/modulefiles")
+load(pathJoin("miniconda3", os.getenv("miniconda3_ver") or "4.12.0"))
+
+setenv("SRW_ENV", "regional_workflow")

modulefiles/tasks/gaea-c5/python_srw.lua

@@ -1,4 +1,8 @@
 unload("miniconda3")
-load("conda")
-setenv("SRW_ENV", "srw_app")
+unload("python")
+prepend_path("MODULEPATH","/lustre/f2/dev/role.epic/contrib/C5/miniconda3/modulefiles")
+load(pathJoin("miniconda3", os.getenv("miniconda3_ver") or "4.12.0"))
+
+setenv("SRW_ENV", "workflow_tools")
+
 load("darshan-runtime/3.4.0")

modulefiles/tasks/gaea-c5/run_vx.local.lua

@@ -22,4 +22,4 @@ if (mode() == "unload") then
   unload(pathJoin("met", met_ver))
   unload(pathJoin("metplus",metplus_ver))
 end
-load("ufs-pyenv")
+load("python_srw")

modulefiles/wflow_gaea-c5.lua

@@ -7,14 +7,15 @@ whatis([===[Loads libraries needed for running the UFS SRW App on gaea ]===])
 
 unload("python")
 load("set_pythonpath")
-load("conda")
+prepend_path("MODULEPATH","/lustre/f2/dev/role.epic/contrib/C5/miniconda3/modulefiles")
+load(pathJoin("miniconda3", os.getenv("miniconda3_ver") or "4.12.0"))
 prepend_path("MODULEPATH","/lustre/f2/dev/role.epic/contrib/C5/rocoto/modulefiles")
 load("rocoto")
 
 pushenv("MKLROOT", "/opt/intel/oneapi/mkl/2023.1.0/")
 
 if mode() == "load" then
    LmodMsgRaw([===[Please do the following to activate conda:
-       > conda activate srw_app
+       > conda activate workflow_tools
 ]===])
 end