updated nvcaffe install directions

docs/building-nvcaffe.md

@@ -8,7 +8,22 @@ The code is released in NVIDIA's caffe repo in the experimental/fp16 branch, loc
 #### 1. Installing Dependencies
 
 ``` bash
-$ sudo apt-get install protobuf-compiler libprotobuf-dev cmake git libboost-thread1.55-dev libgflags-dev libgoogle-glog-dev libhdf5-dev libatlas-dev libatlas-base-dev libatlas3-base liblmdb-dev libleveldb-dev
+$ sudo apt-get update -y
+$ sudo apt-get install cmake -y
+
+# General dependencies
+$ sudo apt-get install libprotobuf-dev libleveldb-dev libsnappy-dev \
+libhdf5-serial-dev protobuf-compiler -y
+$ sudo apt-get install --no-install-recommends libboost-all-dev -y
+
+# BLAS
+$ sudo apt-get install libatlas-base-dev -y
+
+# Remaining Dependencies
+$ sudo apt-get install libgflags-dev libgoogle-glog-dev liblmdb-dev -y
+
+# Python Dependencies
+$ sudo apt-get install python-dev python-numpy python-skimage python-protobuf -y
 ```
 
 The Snappy package needs a symbolic link created for Caffe to link correctly:
@@ -31,6 +46,7 @@ This will checkout the repo to a local directory called `caffe` on your Jetson.
 ``` bash
 $ cd caffe
 $ cp Makefile.config.example Makefile.config
+$ rm -rf cmake/ CMakeLists.txt
 ```
 
 ###### Enable FP16:
@@ -51,14 +67,48 @@ $ sed -i 's/# USE_CUDNN/USE_CUDNN/g' Makefile.config
 $ sed -i 's/-gencode arch=compute_50,code=compute_50/-gencode arch=compute_53,code=sm_53 -gencode arch=compute_53,code=compute_53/g' Makefile.config
 ```
 
+###### Setup header/linker paths
+
+``` bash
+    INCLUDE_DIRS := $(PYTHON_INCLUDE) /usr/local/include
+    becomes
+    INCLUDE_DIRS := $(PYTHON_INCLUDE) /usr/local/include /usr/include/hdf5/serial/
+
+    LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/lib /usr/lib
+    becomes
+    LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/lib /usr/lib /usr/lib/aarch64-linux-gnu/hdf5/serial/
+```
+
+###### Fix HDF5 Linking Issue
+
+``` bash
+$ sudo ln -s /usr/lib/aarch64-linux-gnu/libhdf5_serial.so.10 /usr/lib/aarch64-linux-gnu/libhdf5.so
+$ sudo ln -s /usr/lib/aarch64-linux-gnu/libhdf5_serial_hl.so.10 /usr/lib/aarch64-linux-gnu/libhdf5_hl.so
+```
+
 #### 4. Compiling nvcaffe
 
 ``` bash
-$ make all
-$ make test
+$ make -j4
+$ make pycaffe
+$ make distribute
+```
+
+#### 5. Set environment paths
+
+``` bash
+# Edit the following lines in .bashrc and then source .bashrc
+export PATH=/usr/local/cuda-8.0/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/ubuntu/caffe/build/tools
+export PYTHONPATH=/home/ubuntu/caffe/python:$PYTHONPATH
+```
+
+#### 6. Install iPython (optional)
+
+``` bash
+$ sudo apt-get install ipython ipython-notebook python-pandas -y
 ```
 
-#### 5. Testing nvcaffe
+#### 6. Testing nvcaffe
 
 ``` bash
 $ make runtest