GitHub repository for 'XEdgeConv: Leveraging graph convolutions for efficient, permutation-and rotation-invariant dense 3D medical image segmentation'

Installation

pip install nnunetv2

Copy the trainers to: virtualenvs/<your_python_environment>/lib/python*.*/site-packages/nnunet/training/network_training/nnUNet_variants

Running

For further info on how to use the nnunet framework, refer to: https://github.com/MIC-DKFZ/nnUNet

Citation

Weihsbach, C., Hansen, L., & Heinrich, M. (2022, November). XEdgeConv: Leveraging graph convolutions for efficient, permutation-and rotation-invariant dense 3D medical image segmentation. In Geometric Deep Learning in Medical Image Analysis (pp. 61-71). PMLR.

https://proceedings.mlr.press/v194/weihsbach22a.html