Update doctests

mtsch · Jun 4, 2024 · c5ca5df · c5ca5df
1 parent ac31e73
commit c5ca5df
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Showing 5 changed files with 11 additions and 14 deletions.
diff --git a/src/base/abstractfiltration.jl b/src/base/abstractfiltration.jl
@@ -162,10 +162,7 @@ julia> vertices(Rips([0 1 1; 1 0 1; 1 1 0]))
 Base.OneTo(3)
 
 julia> vertices(Cubical([0 1 1; 1 0 1; 1 1 0]))
-3×3 CartesianIndices{2, Tuple{Base.OneTo{Int64}, Base.OneTo{Int64}}}:
- CartesianIndex(1, 1)  CartesianIndex(1, 2)  CartesianIndex(1, 3)
- CartesianIndex(2, 1)  CartesianIndex(2, 2)  CartesianIndex(2, 3)
- CartesianIndex(3, 1)  CartesianIndex(3, 2)  CartesianIndex(3, 3)
+CartesianIndices((3, 3))
 
 ```
 """

diff --git a/src/base/chain.jl b/src/base/chain.jl
@@ -22,7 +22,7 @@ julia> data = [(rand(), rand(), rand()) for _ in 1:100];
 julia> result = ripserer(data; reps=true, modulus=7);
 
 julia> chain = result[end][end].representative
-28-element Chain{Ripserer.Mod{7},Ripserer.Simplex{1, Float64, Int64}}:
+28-element Chain{Mod{7},Simplex{1, Float64, Int64}}:
  +Simplex{1}((68, 54), 0.25178097927369875) => 6 mod 7
  +Simplex{1}((54, 46), 0.2575262844682746) => 1 mod 7
  +Simplex{1}((88, 56), 0.25936896586973557) => 1 mod 7

diff --git a/src/extra/circularcoordinates.jl b/src/extra/circularcoordinates.jl
@@ -192,7 +192,7 @@ CircularCoordinates(
   radius=(0.9510565162951535,),
   n_landmarks=10,
   partition=linear,
-  metric=Distances.Euclidean(0.0),
+  metric=Euclidean(0.0),
 )
 
 julia> summary(cc(data))

diff --git a/src/filtrations/alpha.jl b/src/filtrations/alpha.jl
@@ -180,13 +180,13 @@ julia> length(Ripserer.edges(rips))
 
 julia> sort(ripserer(alpha)[2], by=persistence)[end]
 [0.375, 2.01) with:
- birth_simplex: Ripserer.Simplex{1, Float64, Int64}
- death_simplex: Ripserer.Simplex{2, Float64, Int64}
+ birth_simplex: Simplex{1, Float64, Int64}
+ death_simplex: Simplex{2, Float64, Int64}
 
 julia> sort(ripserer(rips)[2], by=persistence)[end]
 [0.375, 2.01) with:
- birth_simplex: Ripserer.Simplex{1, Float64, Int64}
- death_simplex: Ripserer.Simplex{2, Float64, Int64}
+ birth_simplex: Simplex{1, Float64, Int64}
+ death_simplex: Simplex{2, Float64, Int64}
 ```
 """
 struct Alpha{I,P<:SVector} <: AbstractCustomFiltration{I,Float64}

diff --git a/test/doctests.jl b/test/doctests.jl
@@ -2,11 +2,11 @@ using Documenter
 using Distances
 using Ripserer
 
-if VERSION ≥ v"1.8-DEV" || VERSION < v"1.7-DEV" || !Sys.islinux()
-    @warn "Doctests only run on Linux and Julia 1.7"
+if VERSION ≥ v"1.11-DEV" || VERSION < v"1.10-DEV" || !Sys.islinux()
+    @warn "Doctests only run on Linux and Julia 1.10"
 else
     DocMeta.setdocmeta!(
-        Ripserer, :DocTestSetup, :(using Ripserer; using Distances); recursive=true
+        Ripserer, :DocTestSetup, :(using Ripserer; using Distances); recursive=true,
     )
-    doctest(Ripserer)
+    doctest(Ripserer; fix=true)
 end