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.gitignore
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.git/*
[#]*[#]
.\#*
*~
devscript.R
.Rhistory
_build*
*.Rproj
.Rproj.user
*-concordance.tex
*.log
*.synctex.gz
*.tex
# *.png
*.RData
*.rdb
*.rdx
*.rd
*.pdf
*.prm
*.o
*.so
batch.R
docs/tutorial_files/figure-html/unnamed-chunk-7-1.png
docs/tutorial_files/figure-html/unnamed-chunk-9-1.png
docs/tutorial_files/figure-html/unnamed-chunk-10-1.png
docs/tutorial_files/figure-html/unnamed-chunk-11-1.png
docs/tutorial_files/figure-html/unnamed-chunk-12-1.png
docs/tutorial_files/figure-html/unnamed-chunk-13-1.png
docs/tutorial_files/figure-html/unnamed-chunk-14-1.png
docs/tutorial_files/figure-html/unnamed-chunk-18-1.png
docs/tutorial_files/figure-html/unnamed-chunk-20-1.png
docs/tutorial_files/figure-html/unnamed-chunk-21-1.png
docs/tutorial_files/figure-html/unnamed-chunk-22-1.png
docs/tutorial_files/figure-html/unnamed-chunk-23-1.png
docs/tutorial_files/figure-html/unnamed-chunk-24-1.png
docs/tutorial_files/figure-html/unnamed-chunk-25-1.png
docs/tutorial_files/figure-html/unnamed-chunk-26-1.png
docs/tutorial_files/figure-html/unnamed-chunk-27-1.png
docs/tutorial_files/figure-html/unnamed-chunk-28-1.png
docs/tutorial_files/figure-html/unnamed-chunk-29-1.png
docs/tutorial_files/figure-html/unnamed-chunk-30-1.png
docs/tutorial_files/figure-html/unnamed-chunk-31-1.png
# docs/tutorial_2.html
docs/tutorial_files/figure-html/unnamed-chunk-32-1.png
docs/tutorial_files/figure-html/unnamed-chunk-33-1.png
docs/debug.rmd
docs/debug_cache/html/__packages
docs/debug_cache/html/setup_c2d26f00c0f7c93c8fb63dcdf96fc656.RData
docs/debug_cache/html/setup_c2d26f00c0f7c93c8fb63dcdf96fc656.rdb
docs/debug_cache/html/setup_c2d26f00c0f7c93c8fb63dcdf96fc656.rdx
docs/debug_files/figure-html/events-1.png
docs/tutorial_2_cache/html/__packages
docs/tutorial_2_cache/html/events_ea4e7ab25448344cc12ed22b7fc32f23.RData
docs/tutorial_2_cache/html/events_ea4e7ab25448344cc12ed22b7fc32f23.rdb
docs/tutorial_2_cache/html/setup_95729b4417099163585d693c1e345278.RData
docs/tutorial_2_cache/html/setup_95729b4417099163585d693c1e345278.rdb
docs/tutorial_2_cache/html/setup_95729b4417099163585d693c1e345278.rdx
# docs/tutorial_2_files/figure-html/deletions and rigma-1.png
# docs/tutorial_2_files/figure-html/events-1.png
# docs/tutorial_2_files/figure-html/events-2.png
# docs/tutorial_2_files/figure-html/unnamed-chunk-2-1.png
# docs/tutorial_2_files/figure-html/unnamed-chunk-2-2.png
docs/tutorial_cache/html/__packages
docs/tutorial_cache/html/unnamed-chunk-1_fa9df7c1884cbb8da3e500770f681f9a.RData
docs/tutorial_cache/html/unnamed-chunk-1_fa9df7c1884cbb8da3e500770f681f9a.rdb
docs/tutorial_cache/html/unnamed-chunk-1_fa9df7c1884cbb8da3e500770f681f9a.rdx
docs/tutorial_cache/html/unnamed-chunk-2_fb6731bb8f3d8c0922a0d8e2835ef847.RData
docs/tutorial_cache/html/unnamed-chunk-2_fb6731bb8f3d8c0922a0d8e2835ef847.rdb
docs/tutorial_cache/html/unnamed-chunk-2_fb6731bb8f3d8c0922a0d8e2835ef847.rdx
docs/tutorial_cache/html/unnamed-chunk-3_a81070afea2cd322305d016d8dbace33.RData
docs/tutorial_cache/html/unnamed-chunk-3_a81070afea2cd322305d016d8dbace33.rdb
docs/debug.html
# docs/tutorial_2_files/figure-html/duplications and pyrgo-1.png
tests/testthat/circos.pdf
tests/testthat/test.json
tests/testthat/test.pdf
tests/testthat/coverage/data/data.16.csv
tests/testthat/coverage/data/data.19.csv
tests/testthat
!tests/testthat/*.R
R/raw.prm
*.prm
src/*
*.gz.[0-9]*
*.bam.*
*.bam
*.swp