0.3.4

• pathway integration
• making it available through bioconda

0.3.3

• using setup.py for installation and other minor changes

Baitadi

• removed gff file name from downstream file naming

Baitadi

• Fixed edgeR and deseq2 bugs where sample numeric sample names were being read as numbers, hence 01 was 1. Now reads as character.
• Changed the ID form to #SampleID in experminetal design file to stay consistent with other EDGE bioinformatics pipelin.
• Added another pipeline that now detects novel regions that are being expressed.
• created another module to store pipelines/workflows.
• Method options work and now only performs DE analysis with specified tools.

with new FaQC

• new FaQC is implemented now, which removes Perl dependencies.
• tested in CentOS and works.
• hisat2-align fails in ubuntu in Travis CI, still.

Test Release

0.1

option of pipeline to use for diff exp analysis